Removing dbxref annotation from term

Removing dbxref annotation on 'valve interstitial cell' (inadvertently added during term creation).
obophenotype · Dec 15, 2022 · e79795c · e79795c
1 parent 641e48b
commit e79795c
Show file tree

Hide file tree

Showing 16 changed files with 3,465 additions and 3,501 deletions.
diff --git a/cl-base.obo b/cl-base.obo
@@ -30392,7 +30392,7 @@ property_value: http://purl.org/dc/terms/date 2022-11-30T14:35:08Z xsd:dateTime
 
 [Term]
 id: CL:4030032
-name: valve interstitial cell {xref="PMID:16456103"}
+name: valve interstitial cell
 def: "An interstitial cell that is part of a cardiac valve leaflet. Along with valve endothelial cells, a valve interstitial cell maintains tissue homeostasis for the function of cardiac valves through secreting biochemical signals, matrix proteins and matrix remodeling enzymes." [https://doi.org/10.1098/rsif.2017.0580, https://doi.org/10.1161/ATVBAHA.120.314789, https://doi.org/10.1161/JAHA.117.006339, https://doi.org/10.2353/ajpath.2007.070251, https://orcid.org/0000-0001-7655-4833, PMID:25311230]
 comment: Activated valve interstitial cells undergo continual turn over into deactivated fibroblasts and other cell fates (such as apoptosis). {xref="PMID:25311230"}
 synonym: "cardiac valve interstitial cell" EXACT []

diff --git a/cl-base.owl b/cl-base.owl
@@ -3964,7 +3964,7 @@ Covers cells actively being cultured or stored in a quiescent state for future u
  <oboInOwl:hasDbXref>GOC:add</oboInOwl:hasDbXref>
  <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:dsd</oboInOwl:hasDbXref>
  <oboInOwl:hasDbXref>GOC:tfm</oboInOwl:hasDbXref>
- <oboInOwl:hasDbXref>ISBN:068340007X</oboInOwl:hasDbXref>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ISBN:068340007X</oboInOwl:hasDbXref>
  <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MESH:D008407</oboInOwl:hasDbXref>
  <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMCID:PMC1312421</oboInOwl:hasDbXref>
  <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMCID:PMC2855166</oboInOwl:hasDbXref>
@@ -3990,7 +3990,7 @@ Covers cells actively being cultured or stored in a quiescent state for future u
  <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CL_0000097"/>
  <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
  <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">tissue basophil</owl:annotatedTarget>
- <oboInOwl:hasDbXref>ISBN:068340007X</oboInOwl:hasDbXref>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ISBN:068340007X</oboInOwl:hasDbXref>
  </owl:Axiom>
 
 
@@ -4903,7 +4903,7 @@ Covers cells actively being cultured or stored in a quiescent state for future u
  <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
  <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Ectoderm destined to be nervous tissue.</owl:annotatedTarget>
  <oboInOwl:hasDbXref>GOC:tfm</oboInOwl:hasDbXref>
- <oboInOwl:hasDbXref>ISBN:068340007X</oboInOwl:hasDbXref>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ISBN:068340007X</oboInOwl:hasDbXref>
  </owl:Axiom>
 
 
@@ -11067,7 +11067,7 @@ Covers cells actively being cultured or stored in a quiescent state for future u
  <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
  <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A cell involved in the elimination of metabolic and foreign toxins, and in maintaining the ionic, acid-base and water balance of biological fluids.</owl:annotatedTarget>
  <oboInOwl:hasDbXref>GOC:tfm</oboInOwl:hasDbXref>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:19783135</oboInOwl:hasDbXref>
+ <oboInOwl:hasDbXref>PMID:19783135</oboInOwl:hasDbXref>
  </owl:Axiom>
 
 
@@ -11860,7 +11860,7 @@ Covers cells actively being cultured or stored in a quiescent state for future u
  <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
  <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A cell capable of producting norepiniphrine. Norepiniphrine is a catecholamine with multiple roles including as a hormone and a neurotransmitter. In addition, epiniphrine is synthesized from norepiniphrine by the actions of the phenylethanolamine N-methyltransferase enzyme.</owl:annotatedTarget>
  <oboInOwl:hasDbXref>GOC:tfm</oboInOwl:hasDbXref>
- <oboInOwl:hasDbXref>ISBN:068340007X</oboInOwl:hasDbXref>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ISBN:068340007X</oboInOwl:hasDbXref>
  </owl:Axiom>
 
 
@@ -12123,7 +12123,7 @@ Covers cells actively being cultured or stored in a quiescent state for future u
  <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBbt:00003184</oboInOwl:hasDbXref>
  <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GO:0061320</oboInOwl:hasDbXref>
  <oboInOwl:hasDbXref>GOC:tfm</oboInOwl:hasDbXref>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:19783135</oboInOwl:hasDbXref>
+ <oboInOwl:hasDbXref>PMID:19783135</oboInOwl:hasDbXref>
  </owl:Axiom>
  <owl:Axiom>
  <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CL_0000474"/>
@@ -12435,7 +12435,7 @@ Covers cells actively being cultured or stored in a quiescent state for future u
  <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
  <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A large binucleate cell that forms a &apos;garland&apos; around the anterior end of the proventriculus (cardia) at its junction with the esophagus in both adults and larvae flies. Each cell is surrounded by a basement membrane and there are numerous micro-invaginations (lacunae) extending from the surface into the cytoplasm. At the mouth of each lacuna is a doubled filament forming a specialised filtration system (diaphragm). The filtrate is endocytosed from the lacunae.</owl:annotatedTarget>
  <oboInOwl:hasDbXref>GOC:tfm</oboInOwl:hasDbXref>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:19783135</oboInOwl:hasDbXref>
+ <oboInOwl:hasDbXref>PMID:19783135</oboInOwl:hasDbXref>
  <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">fbbt:00005059</oboInOwl:hasDbXref>
  </owl:Axiom>
  <owl:Axiom>
@@ -40644,7 +40644,7 @@ radial glial cells acting as neural progenitors throughout life.</rdfs:comment>
  <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
  <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A chromaffin cell of the adrenal medulla that produces norepinephrine.</owl:annotatedTarget>
  <oboInOwl:hasDbXref>GOC:tfm</oboInOwl:hasDbXref>
- <oboInOwl:hasDbXref>ISBN:068340007X</oboInOwl:hasDbXref>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ISBN:068340007X</oboInOwl:hasDbXref>
  </owl:Axiom>
 
 
@@ -40919,7 +40919,7 @@ radial glial cells acting as neural progenitors throughout life.</rdfs:comment>
  <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
  <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">One of two small cells formed by the first and second meiotic division of oocytes.</owl:annotatedTarget>
  <oboInOwl:hasDbXref>GOC:tfm</oboInOwl:hasDbXref>
- <oboInOwl:hasDbXref>ISBN:068340007X</oboInOwl:hasDbXref>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ISBN:068340007X</oboInOwl:hasDbXref>
  <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://en.wikipedia.org/wiki/Polar_body</oboInOwl:hasDbXref>
  </owl:Axiom>
 
@@ -40945,7 +40945,7 @@ radial glial cells acting as neural progenitors throughout life.</rdfs:comment>
  <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
  <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A small cell formed by the first meiotic division of oocytes.</owl:annotatedTarget>
  <oboInOwl:hasDbXref>GOC:tfm</oboInOwl:hasDbXref>
- <oboInOwl:hasDbXref>ISBN:068340007X</oboInOwl:hasDbXref>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ISBN:068340007X</oboInOwl:hasDbXref>
  </owl:Axiom>
  <owl:Axiom>
  <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CL_0002091"/>
@@ -41022,7 +41022,7 @@ radial glial cells acting as neural progenitors throughout life.</rdfs:comment>
  <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
  <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A small cell formed by the second meiotic division of oocytes. In mammals, the second polar body may fail to form unless the ovum has been penetrated by a sperm cell.</owl:annotatedTarget>
  <oboInOwl:hasDbXref>GOC:tfm</oboInOwl:hasDbXref>
- <oboInOwl:hasDbXref>ISBN:068340007X</oboInOwl:hasDbXref>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ISBN:068340007X</oboInOwl:hasDbXref>
  </owl:Axiom>
  <owl:Axiom>
  <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CL_0002093"/>
@@ -41077,7 +41077,7 @@ radial glial cells acting as neural progenitors throughout life.</rdfs:comment>
  <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
  <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A cell in the hilum of the ovary that produces androgens.</owl:annotatedTarget>
  <oboInOwl:hasDbXref>GOC:tfm</oboInOwl:hasDbXref>
- <oboInOwl:hasDbXref>ISBN:068340007X</oboInOwl:hasDbXref>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ISBN:068340007X</oboInOwl:hasDbXref>
  </owl:Axiom>
 
 
@@ -43142,7 +43142,7 @@ radial glial cells acting as neural progenitors throughout life.</rdfs:comment>
  <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
  <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The dead keratin-filled squamous cell of the stratum corneum. This cell type lacks a nucleus.</owl:annotatedTarget>
  <oboInOwl:hasDbXref>GOC:tfm</oboInOwl:hasDbXref>
- <oboInOwl:hasDbXref>ISBN:068340007X</oboInOwl:hasDbXref>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ISBN:068340007X</oboInOwl:hasDbXref>
  </owl:Axiom>
 
 
@@ -45800,7 +45800,7 @@ radial glial cells acting as neural progenitors throughout life.</rdfs:comment>
  <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
  <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBSOLETE: A lymphocyte that lacks T or B cell surface markers.</owl:annotatedTarget>
  <oboInOwl:hasDbXref>GOC:tfm</oboInOwl:hasDbXref>
- <oboInOwl:hasDbXref>ISBN:068340007X</oboInOwl:hasDbXref>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ISBN:068340007X</oboInOwl:hasDbXref>
  </owl:Axiom>
 
 
@@ -47944,7 +47944,7 @@ radial glial cells acting as neural progenitors throughout life.</rdfs:comment>
  <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A stem cell of embryonic origin.</owl:annotatedTarget>
  <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:dsd</oboInOwl:hasDbXref>
  <oboInOwl:hasDbXref>GOC:tfm</oboInOwl:hasDbXref>
- <oboInOwl:hasDbXref>ISBN:068340007X</oboInOwl:hasDbXref>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ISBN:068340007X</oboInOwl:hasDbXref>
  <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:18179856</oboInOwl:hasDbXref>
  </owl:Axiom>
 
@@ -54851,7 +54851,7 @@ radial glial cells acting as neural progenitors throughout life.</rdfs:comment>
  <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
  <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An insect excretory cell that regulates hemolymph composition by filtration and filtrate endocytosis.</owl:annotatedTarget>
  <oboInOwl:hasDbXref>GOC:tfm</oboInOwl:hasDbXref>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:19783135</oboInOwl:hasDbXref>
+ <oboInOwl:hasDbXref>PMID:19783135</oboInOwl:hasDbXref>
  </owl:Axiom>
 
 
@@ -54970,7 +54970,7 @@ radial glial cells acting as neural progenitors throughout life.</rdfs:comment>
  <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
  <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A disseminated nephrocyte is a nephrocyte that filters hemolymph and is found at scattered locations in the fat body or other tissues.</owl:annotatedTarget>
  <oboInOwl:hasDbXref>GOC:tfm</oboInOwl:hasDbXref>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:19783135</oboInOwl:hasDbXref>
+ <oboInOwl:hasDbXref>PMID:19783135</oboInOwl:hasDbXref>
  </owl:Axiom>
 
 
@@ -93066,12 +93066,6 @@ plexiform layer using GABA.</owl:annotatedTarget>
  <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Activated valve interstitial cells undergo continual turn over into deactivated fibroblasts and other cell fates (such as apoptosis).</owl:annotatedTarget>
  <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:25311230</oboInOwl:hasDbXref>
  </owl:Axiom>
- <owl:Axiom>
- <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CL_4030032"/>
- <owl:annotatedProperty rdf:resource="http://www.w3.org/2000/01/rdf-schema#label"/>
- <owl:annotatedTarget>valve interstitial cell</owl:annotatedTarget>
- <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:16456103</oboInOwl:hasDbXref>
- </owl:Axiom>
 
 
 

diff --git a/cl-basic.obo b/cl-basic.obo
@@ -26127,7 +26127,7 @@ property_value: dcterms-date 2022-11-30T14:35:08Z xsd:dateTime
 
 [Term]
 id: CL:4030032
-name: valve interstitial cell {xref="PMID:16456103"}
+name: valve interstitial cell
 def: "An interstitial cell that is part of a cardiac valve leaflet. Along with valve endothelial cells, a valve interstitial cell maintains tissue homeostasis for the function of cardiac valves through secreting biochemical signals, matrix proteins and matrix remodeling enzymes." [https://doi.org/10.1098/rsif.2017.0580, https://doi.org/10.1161/ATVBAHA.120.314789, https://doi.org/10.1161/JAHA.117.006339, https://doi.org/10.2353/ajpath.2007.070251, https://orcid.org/0000-0001-7655-4833, PMID:25311230]
 comment: Activated valve interstitial cells undergo continual turn over into deactivated fibroblasts and other cell fates (such as apoptosis). {xref="PMID:25311230"}
 synonym: "cardiac valve interstitial cell" EXACT []