Addresses #1150 Obsolete 'somatic cell'

[ghost]

Addresses #1150 Obsolete 'somatic cell'

[ghost]

#gogoeditdiff

[github-actions]

Here's a diff of how these changes impact the classified ontology (on -simple file):

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-simple.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2023-09-15/cl-simple.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-simple-master.owl/cl-simple.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-simple.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2023-09-15/cl-simple.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-simple-pr.owl/cl-simple.owl

Ontology imports

Ontology annotations

Caenorhabditis hypodermal cell http://purl.obolibrary.org/obo/CL_0000411

Removed

• Caenorhabditis hypodermal cell SubClassOf somatic cell

His-Purkinje system cell http://purl.obolibrary.org/obo/CL_0010007

Removed

• His-Purkinje system cell SubClassOf cell

Added

• His-Purkinje system cell SubClassOf cardiocyte

arcade cell http://purl.obolibrary.org/obo/CL_0000418

Removed

• arcade cell SubClassOf somatic cell

barrier epithelial cell http://purl.obolibrary.org/obo/CL_0000073

Removed

• barrier epithelial cell SubClassOf somatic cell

cardiac septum cell http://purl.obolibrary.org/obo/CL_2000022

Removed

• cardiac septum cell SubClassOf cell

Added

• cardiac septum cell SubClassOf cardiocyte

cardiac valve cell http://purl.obolibrary.org/obo/CL_1000147

Removed

• cardiac valve cell SubClassOf cell

Added

• cardiac valve cell SubClassOf cardiocyte

cardiocyte http://purl.obolibrary.org/obo/CL_0002494

Removed

• cardiocyte SubClassOf somatic cell
  • is_inferred "true"

Added

• cardiocyte SubClassOf cell

cell of skeletal muscle http://purl.obolibrary.org/obo/CL_0000188

Removed

• cell of skeletal muscle SubClassOf somatic cell

Added

• cell of skeletal muscle SubClassOf cell

columnar/cuboidal epithelial cell http://purl.obolibrary.org/obo/CL_0000075

Removed

• columnar/cuboidal epithelial cell SubClassOf somatic cell

conjunctival epithelial cell http://purl.obolibrary.org/obo/CL_1000432

Removed

• conjunctival epithelial cell SubClassOf somatic cell

connective tissue cell http://purl.obolibrary.org/obo/CL_0002320

Removed

• connective tissue cell SubClassOf somatic cell
  • is_inferred "true"

Added

• connective tissue cell SubClassOf cell

duct epithelial cell http://purl.obolibrary.org/obo/CL_0000068

Removed

• duct epithelial cell SubClassOf somatic cell

ecto-epithelial cell http://purl.obolibrary.org/obo/CL_0002077

Removed

• ecto-epithelial cell SubClassOf somatic cell

embryonic blood vessel endothelial progenitor cell http://purl.obolibrary.org/obo/CL_0002546

Removed

• embryonic blood vessel endothelial progenitor cell SubClassOf somatic cell

endo-epithelial cell http://purl.obolibrary.org/obo/CL_0002076

Removed

• endo-epithelial cell SubClassOf somatic cell

epithelial cell of amnion http://purl.obolibrary.org/obo/CL_0002536

Removed

• epithelial cell of amnion SubClassOf somatic cell

  • is_inferred "true"

• epithelial cell of amnion SubClassOf epithelial cell

  • is_inferred "true"

Added

• epithelial cell of amnion SubClassOf epithelial cell

epithelial cell of cervix http://purl.obolibrary.org/obo/CL_0002535

Removed

• epithelial cell of cervix SubClassOf epithelial cell

  • is_inferred "true"

• epithelial cell of cervix SubClassOf somatic cell

Added

• epithelial cell of cervix SubClassOf epithelial cell

epithelial cell of external acoustic meatus http://purl.obolibrary.org/obo/CL_1000434

Removed

• epithelial cell of external acoustic meatus SubClassOf epithelial cell

  • is_inferred "true"

• epithelial cell of external acoustic meatus SubClassOf somatic cell

Added

• epithelial cell of external acoustic meatus SubClassOf epithelial cell

epithelial cell of gallbladder http://purl.obolibrary.org/obo/CL_1000415

Removed

• epithelial cell of gallbladder SubClassOf epithelial cell

  • is_inferred "true"

• epithelial cell of gallbladder SubClassOf somatic cell

Added

• epithelial cell of gallbladder SubClassOf epithelial cell

epithelial cell of lacrimal canaliculus http://purl.obolibrary.org/obo/CL_1000433

Removed

• epithelial cell of lacrimal canaliculus SubClassOf somatic cell

• epithelial cell of lacrimal canaliculus SubClassOf epithelial cell

  • is_inferred "true"

Added

• epithelial cell of lacrimal canaliculus SubClassOf epithelial cell

epithelial cell of pancreas http://purl.obolibrary.org/obo/CL_0000083

Removed

• epithelial cell of pancreas SubClassOf somatic cell

• epithelial cell of pancreas SubClassOf epithelial cell

  • is_inferred "true"

Added

• epithelial cell of pancreas SubClassOf epithelial cell

epithelial cell of urethra http://purl.obolibrary.org/obo/CL_1000296

Removed

• epithelial cell of urethra SubClassOf epithelial cell

  • is_inferred "true"

• epithelial cell of urethra SubClassOf somatic cell

Added

• epithelial cell of urethra SubClassOf epithelial cell

epithelial cell of viscerocranial mucosa http://purl.obolibrary.org/obo/CL_1000441

Removed

• epithelial cell of viscerocranial mucosa SubClassOf somatic cell

extraembryonic cell http://purl.obolibrary.org/obo/CL_0000349

Removed

• extraembryonic cell SubClassOf somatic cell

Added

• extraembryonic cell SubClassOf cell

fenestrated cell http://purl.obolibrary.org/obo/CL_0000666

Removed

• fenestrated cell SubClassOf somatic cell

follicular epithelial cell http://purl.obolibrary.org/obo/CL_0000500

Removed

• follicular epithelial cell SubClassOf somatic cell

germ line cell http://purl.obolibrary.org/obo/CL_0000039

Removed

• germ line cell DisjointWith somatic cell

glandular epithelial cell http://purl.obolibrary.org/obo/CL_0000150

Removed

• glandular epithelial cell SubClassOf somatic cell

hair follicle cell http://purl.obolibrary.org/obo/CL_0002559

Removed

• hair follicle cell SubClassOf somatic cell
  • is_inferred "true"

Added

• hair follicle cell SubClassOf cell

hematopoietic cell http://purl.obolibrary.org/obo/CL_0000988

Removed

• hematopoietic cell SubClassOf somatic cell

Added

• hematopoietic cell SubClassOf cell

hepatocyte http://purl.obolibrary.org/obo/CL_0000182

Removed

• hepatocyte SubClassOf somatic cell

inflammatory cell http://purl.obolibrary.org/obo/CL_0009002

Removed

• inflammatory cell SubClassOf somatic cell

Added

• inflammatory cell SubClassOf cell

ionocyte http://purl.obolibrary.org/obo/CL_0005006

Removed

• ionocyte SubClassOf somatic cell

kidney cell http://purl.obolibrary.org/obo/CL_1000497

Removed

• kidney cell SubClassOf somatic cell

Added

• kidney cell SubClassOf cell

larval midgut cell http://purl.obolibrary.org/obo/CL_0009003

Removed

• larval midgut cell SubClassOf somatic cell

Added

• larval midgut cell SubClassOf cell

leading edge cell http://purl.obolibrary.org/obo/CL_0000730

Removed

• leading edge cell SubClassOf somatic cell

mammary gland epithelial cell http://purl.obolibrary.org/obo/CL_0002327

Removed

• mammary gland epithelial cell SubClassOf somatic cell

melanoblast http://purl.obolibrary.org/obo/CL_0000541

Removed

• melanoblast SubClassOf somatic cell

melanocyte http://purl.obolibrary.org/obo/CL_0000148

Removed

• melanocyte SubClassOf pigment cell

  • is_inferred "true"

• melanocyte SubClassOf somatic cell

Added

• melanocyte SubClassOf pigment cell

mesenchymal cell http://purl.obolibrary.org/obo/CL_0008019

Removed

• mesenchymal cell SubClassOf somatic cell

meso-epithelial cell http://purl.obolibrary.org/obo/CL_0002078

Removed

• meso-epithelial cell SubClassOf somatic cell

mesothelial cell of anterior chamber of eye http://purl.obolibrary.org/obo/CL_1000444

Removed

• mesothelial cell of anterior chamber of eye SubClassOf mesothelial cell
  • is_inferred "true"

Added

• mesothelial cell of anterior chamber of eye SubClassOf mesothelial cell

mesothelial cell of dura mater http://purl.obolibrary.org/obo/CL_1000298

Removed

• mesothelial cell of dura mater SubClassOf mesothelial cell
  • is_inferred "true"

Added

• mesothelial cell of dura mater SubClassOf mesothelial cell

mesothelial cell of peritoneum http://purl.obolibrary.org/obo/CL_1000490

Removed

• mesothelial cell of peritoneum SubClassOf mesothelial cell
  • is_inferred "true"

Added

• mesothelial cell of peritoneum SubClassOf mesothelial cell

mesothelial cell of pleura http://purl.obolibrary.org/obo/CL_1000491

Removed

• mesothelial cell of pleura SubClassOf mesothelial cell
  • is_inferred "true"

Added

• mesothelial cell of pleura SubClassOf mesothelial cell

multi fate stem cell http://purl.obolibrary.org/obo/CL_0000048

Removed

• multi fate stem cell SubClassOf somatic cell

mural cell http://purl.obolibrary.org/obo/CL_0008034

Removed

• mural cell SubClassOf somatic cell

muscle cell http://purl.obolibrary.org/obo/CL_0000187

Removed

• muscle cell SubClassOf somatic cell

muscle precursor cell http://purl.obolibrary.org/obo/CL_0000680

Removed

• muscle precursor cell SubClassOf somatic cell

neural cell http://purl.obolibrary.org/obo/CL_0002319

Removed

• neural cell SubClassOf somatic cell

Added

• neural cell SubClassOf cell

osteocyte http://purl.obolibrary.org/obo/CL_0000137

Added

• osteocyte SubClassOf connective tissue cell

peridermal cell http://purl.obolibrary.org/obo/CL_0000078

Removed

• peridermal cell SubClassOf somatic cell

preosteoblast http://purl.obolibrary.org/obo/CL_0007010

Added

• preosteoblast SubClassOf connective tissue cell

retinal pigment epithelial cell http://purl.obolibrary.org/obo/CL_0002586

Removed

• retinal pigment epithelial cell SubClassOf epithelial cell
  • is_inferred "true"

Added

• retinal pigment epithelial cell SubClassOf epithelial cell

salivary gland cell http://purl.obolibrary.org/obo/CL_0009005

Removed

• salivary gland cell SubClassOf somatic cell

Added

• salivary gland cell SubClassOf cell

sensory epithelial cell http://purl.obolibrary.org/obo/CL_0000098

Removed

• sensory epithelial cell SubClassOf somatic cell

somatic cell http://purl.obolibrary.org/obo/CL_0002371

Removed

• somatic cell label "somatic cell"

• somatic cell definition "A cell of an organism that does not pass on its genetic material to the organism's offspring (i.e. a non-germ line cell)."

  • database_cross_reference "GOC:tfm"

  • database_cross_reference "ISBN:0721662544"

• somatic cell SubClassOf cell

Added

• somatic cell term replaced by cell

• somatic cell label "obsolete somatic cell"

• somatic cell deprecated true

• somatic cell definition "OBSOLETE. A cell of an organism that does not pass on its genetic material to the organism's offspring (i.e. a non-germ line cell)."

  • database_cross_reference "GOC:tfm"

  • database_cross_reference "ISBN:0721662544"

• somatic cell comment "somatic cell classification is massively incomplete #1150"

somatic nurse-like cell http://purl.obolibrary.org/obo/CL_4029003

Removed

• somatic nurse-like cell SubClassOf somatic cell

somatic stem cell http://purl.obolibrary.org/obo/CL_0000723

Removed

• somatic stem cell SubClassOf stem cell

  • is_inferred "true"

• somatic stem cell SubClassOf somatic cell

Added

• somatic stem cell SubClassOf stem cell

stratified epithelial cell http://purl.obolibrary.org/obo/CL_0000079

Removed

• stratified epithelial cell SubClassOf somatic cell

syncytial epithelial cell http://purl.obolibrary.org/obo/CL_0000420

Removed

• syncytial epithelial cell SubClassOf somatic cell

transitional epithelial cell http://purl.obolibrary.org/obo/CL_0000244

Removed

• transitional epithelial cell SubClassOf somatic cell

vertebrate lens cell http://purl.obolibrary.org/obo/CL_0002222

Removed

• vertebrate lens cell SubClassOf somatic cell

vestibular dark cell http://purl.obolibrary.org/obo/CL_0000846

Removed

• vestibular dark cell SubClassOf somatic cell

[github-actions]

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/master/src/ontology/cl-edit.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/branch/src/ontology/cl-edit.owl

Ontology imports

Ontology annotations

Caenorhabditis hypodermal cell http://purl.obolibrary.org/obo/CL_0000411

Removed

• Caenorhabditis hypodermal cell SubClassOf somatic cell

M cell of gut http://purl.obolibrary.org/obo/CL_0000682

Removed

• M cell of gut SubClassOf somatic cell

arcade cell http://purl.obolibrary.org/obo/CL_0000418

Removed

• arcade cell SubClassOf somatic cell

barrier epithelial cell http://purl.obolibrary.org/obo/CL_0000073

Removed

• barrier epithelial cell SubClassOf somatic cell

blood vessel endothelial cell http://purl.obolibrary.org/obo/CL_0000071

Removed

• blood vessel endothelial cell SubClassOf somatic cell

cardiocyte http://purl.obolibrary.org/obo/CL_0002494

Removed

• cardiocyte EquivalentTo somatic cell and (part_of some primary circulatory organ)

• cardiocyte SubClassOf somatic cell

  • is_inferred "true"

Added

• cardiocyte EquivalentTo cell and (part_of some primary circulatory organ)

cell of skeletal muscle http://purl.obolibrary.org/obo/CL_0000188

Removed

• cell of skeletal muscle EquivalentTo somatic cell and (part_of some skeletal muscle tissue)

Added

• cell of skeletal muscle EquivalentTo cell and (part_of some skeletal muscle tissue)

columnar/cuboidal epithelial cell http://purl.obolibrary.org/obo/CL_0000075

Removed

• columnar/cuboidal epithelial cell SubClassOf somatic cell

compound eye retinal cell http://purl.obolibrary.org/obo/CL_0009001

Removed

• compound eye retinal cell SubClassOf somatic cell

conjunctival epithelial cell http://purl.obolibrary.org/obo/CL_1000432

Removed

• conjunctival epithelial cell SubClassOf somatic cell

connective tissue cell http://purl.obolibrary.org/obo/CL_0002320

Removed

• connective tissue cell EquivalentTo somatic cell and (part_of some connective tissue)

• connective tissue cell SubClassOf somatic cell

  • is_inferred "true"

Added

• connective tissue cell EquivalentTo cell and (part_of some connective tissue)

corneal endothelial cell http://purl.obolibrary.org/obo/CL_0000132

Removed

• corneal endothelial cell SubClassOf somatic cell

corneal epithelial cell http://purl.obolibrary.org/obo/CL_0000575

Removed

• corneal epithelial cell SubClassOf somatic cell

cuticle secreting cell http://purl.obolibrary.org/obo/CL_0000658

Removed

• cuticle secreting cell SubClassOf somatic cell

duct epithelial cell http://purl.obolibrary.org/obo/CL_0000068

Removed

• duct epithelial cell SubClassOf somatic cell

ecto-epithelial cell http://purl.obolibrary.org/obo/CL_0002077

Removed

• ecto-epithelial cell SubClassOf somatic cell

embryonic blood vessel endothelial progenitor cell http://purl.obolibrary.org/obo/CL_0002546

Removed

• embryonic blood vessel endothelial progenitor cell SubClassOf somatic cell

endo-epithelial cell http://purl.obolibrary.org/obo/CL_0002076

Removed

• endo-epithelial cell SubClassOf somatic cell

epidermal cell http://purl.obolibrary.org/obo/CL_0000362

Removed

• epidermal cell SubClassOf somatic cell

epithelial cell of amnion http://purl.obolibrary.org/obo/CL_0002536

Removed

• epithelial cell of amnion SubClassOf somatic cell

  • is_inferred "true"

• epithelial cell of amnion SubClassOf epithelial cell

  • is_inferred "true"

epithelial cell of anal column http://purl.obolibrary.org/obo/CL_0002634

Removed

• epithelial cell of anal column SubClassOf somatic cell

  • is_inferred "true"

• epithelial cell of anal column SubClassOf epithelial cell

  • is_inferred "true"

epithelial cell of appendix http://purl.obolibrary.org/obo/CL_1000405

Removed

• epithelial cell of appendix SubClassOf somatic cell

  • is_inferred "true"

• epithelial cell of appendix SubClassOf epithelial cell

  • is_inferred "true"

epithelial cell of cervix http://purl.obolibrary.org/obo/CL_0002535

Removed

• epithelial cell of cervix SubClassOf epithelial cell

  • is_inferred "true"

• epithelial cell of cervix SubClassOf somatic cell

epithelial cell of external acoustic meatus http://purl.obolibrary.org/obo/CL_1000434

Removed

• epithelial cell of external acoustic meatus SubClassOf epithelial cell

  • is_inferred "true"

• epithelial cell of external acoustic meatus SubClassOf somatic cell

epithelial cell of gallbladder http://purl.obolibrary.org/obo/CL_1000415

Removed

• epithelial cell of gallbladder SubClassOf epithelial cell

  • is_inferred "true"

• epithelial cell of gallbladder SubClassOf somatic cell

epithelial cell of glomerular capsule http://purl.obolibrary.org/obo/CL_1000450

Removed

• epithelial cell of glomerular capsule SubClassOf epithelial cell

  • is_inferred "true"

• epithelial cell of glomerular capsule SubClassOf somatic cell

  • is_inferred "true"

epithelial cell of intermediate tubule http://purl.obolibrary.org/obo/CL_1000453

Removed

• epithelial cell of intermediate tubule SubClassOf nephron tubule epithelial cell

  • is_inferred "true"

• epithelial cell of intermediate tubule SubClassOf somatic cell

  • is_inferred "true"

epithelial cell of lacrimal canaliculus http://purl.obolibrary.org/obo/CL_1000433

Removed

• epithelial cell of lacrimal canaliculus SubClassOf somatic cell

• epithelial cell of lacrimal canaliculus SubClassOf epithelial cell

  • is_inferred "true"

epithelial cell of lacrimal sac http://purl.obolibrary.org/obo/CL_1000436

Removed

• epithelial cell of lacrimal sac SubClassOf epithelial cell

  • is_inferred "true"

• epithelial cell of lacrimal sac SubClassOf somatic cell

epithelial cell of nephron http://purl.obolibrary.org/obo/CL_1000449

Removed

• epithelial cell of nephron SubClassOf somatic cell

  • is_inferred "true"

• epithelial cell of nephron SubClassOf epithelial cell

  • is_inferred "true"

epithelial cell of pancreas http://purl.obolibrary.org/obo/CL_0000083

Removed

• epithelial cell of pancreas SubClassOf somatic cell

• epithelial cell of pancreas SubClassOf epithelial cell

  • is_inferred "true"

epithelial cell of sweat gland http://purl.obolibrary.org/obo/CL_1000448

Removed

• epithelial cell of sweat gland SubClassOf epithelial cell

  • is_inferred "true"

• epithelial cell of sweat gland SubClassOf somatic cell

  • is_inferred "true"

epithelial cell of urethra http://purl.obolibrary.org/obo/CL_1000296

Removed

• epithelial cell of urethra SubClassOf epithelial cell

  • is_inferred "true"

• epithelial cell of urethra SubClassOf somatic cell

epithelial cell of viscerocranial mucosa http://purl.obolibrary.org/obo/CL_1000441

Removed

• epithelial cell of viscerocranial mucosa SubClassOf somatic cell

extraembryonic cell http://purl.obolibrary.org/obo/CL_0000349

Removed

• extraembryonic cell SubClassOf somatic cell

fenestrated cell http://purl.obolibrary.org/obo/CL_0000666

Removed

• fenestrated cell SubClassOf somatic cell

follicular epithelial cell http://purl.obolibrary.org/obo/CL_0000500

Removed

• follicular epithelial cell SubClassOf somatic cell

germ line cell http://purl.obolibrary.org/obo/CL_0000039

Removed

• germ line cell DisjointWith somatic cell

gingival epithelial cell http://purl.obolibrary.org/obo/CL_0002621

Removed

• gingival epithelial cell SubClassOf epithelial cell

  • is_inferred "true"

• gingival epithelial cell SubClassOf somatic cell

  • is_inferred "true"

glandular epithelial cell http://purl.obolibrary.org/obo/CL_0000150

Removed

• glandular epithelial cell SubClassOf somatic cell

hair follicle cell http://purl.obolibrary.org/obo/CL_0002559

Removed

• hair follicle cell EquivalentTo somatic cell and (part_of some hair follicle)

• hair follicle cell SubClassOf somatic cell

  • is_inferred "true"

Added

• hair follicle cell EquivalentTo cell and (part_of some hair follicle)

hematopoietic cell http://purl.obolibrary.org/obo/CL_0000988

Removed

• hematopoietic cell SubClassOf somatic cell

Added

• hematopoietic cell SubClassOf cell

hepatocyte http://purl.obolibrary.org/obo/CL_0000182

Removed

• hepatocyte SubClassOf somatic cell

inflammatory cell http://purl.obolibrary.org/obo/CL_0009002

Removed

• inflammatory cell SubClassOf somatic cell

Added

• inflammatory cell SubClassOf cell

inner root sheath cell http://purl.obolibrary.org/obo/CL_0002560

Removed

• inner root sheath cell SubClassOf somatic cell
  • is_inferred "true"

ionocyte http://purl.obolibrary.org/obo/CL_0005006

Removed

• ionocyte SubClassOf somatic cell

kidney cell http://purl.obolibrary.org/obo/CL_1000497

Removed

• kidney cell SubClassOf somatic cell

• kidney cell SubClassOf part_of some kidney

larval midgut cell http://purl.obolibrary.org/obo/CL_0009003

Removed

• larval midgut cell SubClassOf somatic cell

Added

• larval midgut cell SubClassOf cell

leading edge cell http://purl.obolibrary.org/obo/CL_0000730

Removed

• leading edge cell SubClassOf somatic cell

littoral cell of liver http://purl.obolibrary.org/obo/CL_0000684

Removed

• littoral cell of liver SubClassOf somatic cell

mammary gland epithelial cell http://purl.obolibrary.org/obo/CL_0002327

Removed

• mammary gland epithelial cell SubClassOf somatic cell

melanoblast http://purl.obolibrary.org/obo/CL_0000541

Removed

• melanoblast SubClassOf somatic cell

melanocyte http://purl.obolibrary.org/obo/CL_0000148

Removed

• melanocyte SubClassOf pigment cell

  • is_inferred "true"

• melanocyte SubClassOf somatic cell

mesenchymal cell http://purl.obolibrary.org/obo/CL_0008019

Removed

• mesenchymal cell SubClassOf somatic cell

Added

• mesenchymal cell SubClassOf cell

meso-epithelial cell http://purl.obolibrary.org/obo/CL_0002078

Removed

• meso-epithelial cell SubClassOf somatic cell

mesothelial cell of anterior chamber of eye http://purl.obolibrary.org/obo/CL_1000444

Removed

• mesothelial cell of anterior chamber of eye SubClassOf somatic cell

• mesothelial cell of anterior chamber of eye SubClassOf mesothelial cell

  • is_inferred "true"

mesothelial cell of dura mater http://purl.obolibrary.org/obo/CL_1000298

Removed

• mesothelial cell of dura mater SubClassOf somatic cell

• mesothelial cell of dura mater SubClassOf mesothelial cell

  • is_inferred "true"

mesothelial cell of parietal peritoneum http://purl.obolibrary.org/obo/CL_1000456

Removed

• mesothelial cell of parietal peritoneum SubClassOf mesothelial cell

  • is_inferred "true"

• mesothelial cell of parietal peritoneum SubClassOf somatic cell

  • is_inferred "true"

mesothelial cell of parietal pleura http://purl.obolibrary.org/obo/CL_1000492

Removed

• mesothelial cell of parietal pleura SubClassOf somatic cell

  • is_inferred "true"

• mesothelial cell of parietal pleura SubClassOf mesothelial cell

  • is_inferred "true"

mesothelial cell of peritoneum http://purl.obolibrary.org/obo/CL_1000490

Removed

• mesothelial cell of peritoneum SubClassOf somatic cell

• mesothelial cell of peritoneum SubClassOf mesothelial cell

  • is_inferred "true"

mesothelial cell of pleura http://purl.obolibrary.org/obo/CL_1000491

Removed

• mesothelial cell of pleura SubClassOf somatic cell

• mesothelial cell of pleura SubClassOf mesothelial cell

  • is_inferred "true"

mesothelial cell of visceral peritoneum http://purl.obolibrary.org/obo/CL_1000457

Removed

• mesothelial cell of visceral peritoneum SubClassOf mesothelial cell

  • is_inferred "true"

• mesothelial cell of visceral peritoneum SubClassOf somatic cell

  • is_inferred "true"

mesothelial cell of visceral pleura http://purl.obolibrary.org/obo/CL_1000493

Removed

• mesothelial cell of visceral pleura SubClassOf somatic cell
  • is_inferred "true"

multi fate stem cell http://purl.obolibrary.org/obo/CL_0000048

Removed

• multi fate stem cell EquivalentTo somatic cell and (bearer of some multipotent) and (capable of some stem cell division)

Added

• multi fate stem cell EquivalentTo cell and (bearer of some multipotent) and (capable of some stem cell division)

mural cell http://purl.obolibrary.org/obo/CL_0008034

Removed

• mural cell SubClassOf somatic cell

muscle cell http://purl.obolibrary.org/obo/CL_0000187

Removed

• muscle cell SubClassOf somatic cell

muscle precursor cell http://purl.obolibrary.org/obo/CL_0000680

Removed

• muscle precursor cell SubClassOf somatic cell

myofibroblast cell http://purl.obolibrary.org/obo/CL_0000186

Removed

• myofibroblast cell SubClassOf somatic cell

neural cell http://purl.obolibrary.org/obo/CL_0002319

Removed

• neural cell SubClassOf somatic cell

outer root sheath cell http://purl.obolibrary.org/obo/CL_0002561

Removed

• outer root sheath cell SubClassOf epithelial cell

  • is_inferred "true"

• outer root sheath cell SubClassOf somatic cell

  • is_inferred "true"

peridermal cell http://purl.obolibrary.org/obo/CL_0000078

Removed

• peridermal cell SubClassOf somatic cell

placental epithelial cell http://purl.obolibrary.org/obo/CL_0002577

Removed

• placental epithelial cell SubClassOf somatic cell
  • is_inferred "true"

retinal pigment epithelial cell http://purl.obolibrary.org/obo/CL_0002586

Removed

• retinal pigment epithelial cell SubClassOf somatic cell

• retinal pigment epithelial cell SubClassOf epithelial cell

  • is_inferred "true"

salivary gland cell http://purl.obolibrary.org/obo/CL_0009005

Removed

• salivary gland cell SubClassOf somatic cell

Added

• salivary gland cell SubClassOf cell

sensory epithelial cell http://purl.obolibrary.org/obo/CL_0000098

Removed

• sensory epithelial cell SubClassOf epithelial cell

• sensory epithelial cell SubClassOf somatic cell

somatic cell http://purl.obolibrary.org/obo/CL_0002371

Removed

• somatic cell label "somatic cell"

• somatic cell definition "A cell of an organism that does not pass on its genetic material to the organism's offspring (i.e. a non-germ line cell)."

  • database_cross_reference "GOC:tfm"

  • database_cross_reference "ISBN:0721662544"

• somatic cell SubClassOf cell

Added

• somatic cell term replaced by cell

• somatic cell label "obsolete somatic cell"

• somatic cell deprecated true

• somatic cell definition "OBSOLETE. A cell of an organism that does not pass on its genetic material to the organism's offspring (i.e. a non-germ line cell)."

  • database_cross_reference "GOC:tfm"

  • database_cross_reference "ISBN:0721662544"

• somatic cell comment "somatic cell classification is massively incomplete #1150"

somatic nurse-like cell http://purl.obolibrary.org/obo/CL_4029003

Removed

• somatic nurse-like cell SubClassOf somatic cell

somatic stem cell http://purl.obolibrary.org/obo/CL_0000723

Removed

• somatic stem cell SubClassOf stem cell

  • is_inferred "true"

• somatic stem cell SubClassOf somatic cell

squamous cell of ectocervix http://purl.obolibrary.org/obo/CL_0002244

Removed

• squamous cell of ectocervix SubClassOf somatic cell

stratified epithelial cell http://purl.obolibrary.org/obo/CL_0000079

Removed

• stratified epithelial cell SubClassOf somatic cell

syncytial epithelial cell http://purl.obolibrary.org/obo/CL_0000420

Removed

• syncytial epithelial cell SubClassOf somatic cell

transitional epithelial cell http://purl.obolibrary.org/obo/CL_0000244

Removed

• transitional epithelial cell SubClassOf somatic cell

urothelial cell http://purl.obolibrary.org/obo/CL_0000731

Removed

• urothelial cell SubClassOf somatic cell
  • is_inferred "true"

vertebrate lens cell http://purl.obolibrary.org/obo/CL_0002222

Removed

• vertebrate lens cell SubClassOf somatic cell

vestibular dark cell http://purl.obolibrary.org/obo/CL_0000846

Removed

• vestibular dark cell SubClassOf somatic cell

[aleixpuigb]

No breaking changes.
Note: cell of skeletal muscle is not classified as muscle cell (it should be reasoned).