NTR: add mesenchymal stem cell of orbital adipose tissue

[paulacalipho]

fixes #2152

[dosumis]

#gogoeditdiff

[github-actions]

Here's a diff of how these changes impact the classified ontology (on -simple file):

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-simple.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2023-09-18/cl-simple.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-simple-master.owl/cl-simple.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-simple.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2023-09-18/cl-simple.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-simple-pr.owl/cl-simple.owl

Ontology imports

Ontology annotations

CL_4040004 http://purl.obolibrary.org/obo/CL_4040004

Added

• CL_4040004 label "mesenchymal stem cell of orbital adipose tissue"

• CL_4040004 has exact synonym "OAMSC"

  • database_cross_reference "PMID:31377878"

• CL_4040004 date "2023-09-18T10:43:00Z"^^dateTime

• CL_4040004 contributor 0000-0002-0819-0473

• CL_4040004 has exact synonym "Orbital ASCs"

  • database_cross_reference "PMID:30210548"

• CL_4040004 definition "Any mesenchymal stem cell of adipose tissue that is part of an orbital region."

  • database_cross_reference 0000-0002-0819-0473

• CL_4040004 has exact synonym "orbital adipose-derived mesenchymal stem cell"

  • database_cross_reference "PMID:31377878"

• Class: CL_4040004

• CL_4040004 SubClassOf mesenchymal stem cell of adipose tissue

[github-actions]

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/master/src/ontology/cl-edit.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/branch/src/ontology/cl-edit.owl

Ontology imports

Ontology annotations

CL_4040004 http://purl.obolibrary.org/obo/CL_4040004

Added

• CL_4040004 label "mesenchymal stem cell of orbital adipose tissue"

• CL_4040004 has exact synonym "OAMSC"

  • database_cross_reference "PMID:31377878"

• CL_4040004 date "2023-09-18T10:43:00Z"^^dateTime

• CL_4040004 contributor 0000-0002-0819-0473

• CL_4040004 has exact synonym "Orbital ASCs"

  • database_cross_reference "PMID:30210548"

• CL_4040004 definition "Any mesenchymal stem cell of adipose tissue that is part of an orbital region."

  • database_cross_reference 0000-0002-0819-0473

• CL_4040004 has exact synonym "orbital adipose-derived mesenchymal stem cell"

  • database_cross_reference "PMID:31377878"

• Class: CL_4040004

• CL_4040004 EquivalentTo mesenchymal stem cell of adipose tissue and (part_of some orbital region)

[dosumis]

Looks good to me. One thing that might improve it is if we had a term for adipose tissue of ocular region in Uberon. I wouldn't want this to be a blocker, but please consider adding an uberon ticket on this, referencing this term. Thanks!

[paulacalipho]

thanks @dosumis for reviewing this term. UBERON_0006671 orbital fat pad has exact synonyms: orbital fat body, retrobulbar fat, orbital fat, intraorbital fat pad. The term you suggest "adipose tissue of ocular region" could be added as synonym of UBERON_0006671? Or you suggest to create a separate term?