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File clean up fix for generic_coverage.py #2223

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merged 2 commits into from
Nov 22, 2023
Merged

File clean up fix for generic_coverage.py #2223

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abd0cfd
Updated generic_coverage.py
ubyndr Nov 17, 2023
732b6f9
Changed relation-graph --output-file path to tmp folder
ubyndr Nov 17, 2023
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7 changes: 3 additions & 4 deletions src/scripts/generic_coverage.py
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Original file line number Diff line number Diff line change
@@ -1,4 +1,5 @@
#!/usr/bin/env python

import argparse
import csv
from collections import defaultdict
Expand Down Expand Up @@ -308,7 +309,7 @@ def modify_docker_script(input_file, _output_file):
"--ontology-file",
"cl-full.owl",
"--output-file",
"test.ttl",
"tmp/test.ttl",
"--output-subclasses",
"true",
"false",
Expand All @@ -326,11 +327,9 @@ def modify_docker_script(input_file, _output_file):
run_command(relation_graph_command, working_directory)

cl_base = Graph().parse("../ontology/cl-full.owl", format="xml")
cl_rel = Graph().parse("../ontology/test.ttl", format="ttl")
cl_rel = Graph().parse("../ontology/tmp/test.ttl", format="ttl")
cl = cl_base + cl_rel

cl.serialize("ontology.owl", format="turtle")

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term_dict = {}
with open(file_name, mode="r", encoding="utf-8-sig", newline="") as csvfile:
reader = csv.DictReader(csvfile)
Expand Down