Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

[Feature] Support NYU depth estimation dataset #3269

Merged
merged 7 commits into from
Aug 17, 2023
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
17 changes: 17 additions & 0 deletions docs/en/user_guides/2_dataset_prepare.md
Original file line number Diff line number Diff line change
Expand Up @@ -198,6 +198,13 @@ mmsegmentation
| │   │   │ └── rles
| │ │ │ │ ├──sem_seg_train.json
| │ │ │ │ └──sem_seg_val.json
│ ├── nyu
│ │ ├── images
│ │ │ ├── train
│ │ │ ├── test
│ │ ├── annotations
│ │ │ ├── train
│ │ │ ├── test
```

## Cityscapes
Expand Down Expand Up @@ -716,3 +723,13 @@ mmsegmentation
| │ │ │ │ ├──sem_seg_train.json
| │ │ │ │ └──sem_seg_val.json
```

## NYU

- To access the NYU dataset, you can download it from [this link](https://drive.google.com/file/d/1wC-io-14RCIL4XTUrQLk6lBqU2AexLVp/view?usp=share_link)

- Once the download is complete, you can utilize the [tools/dataset_converters/nyu.py](/tools/dataset_converters/nyu.py) script to extract and organize the data into the required format. Run the following command in your terminal:

```bash
python tools/dataset_converters/nyu.py nyu.zip
```
17 changes: 17 additions & 0 deletions docs/zh_cn/user_guides/2_dataset_prepare.md
Original file line number Diff line number Diff line change
Expand Up @@ -198,6 +198,13 @@ mmsegmentation
| │   │   │ └── rles
| │ │ │ │ ├──sem_seg_train.json
| │ │ │ │ └──sem_seg_val.json
│ ├── nyu
│ │ ├── images
│ │ │ ├── train
│ │ │ ├── test
│ │ ├── annotations
│ │ │ ├── train
│ │ │ ├── test
```

## Cityscapes
Expand Down Expand Up @@ -712,3 +719,13 @@ mmsegmentation
| │ │ │ │ ├──sem_seg_train.json
| │ │ │ │ └──sem_seg_val.json
```

## NYU

- 您可以从 [这个链接](https://drive.google.com/file/d/1wC-io-14RCIL4XTUrQLk6lBqU2AexLVp/view?usp=share_link) 下载 NYU 数据集

- 下载完成后,您可以使用 [tools/dataset_converters/nyu.py](/tools/dataset_converters/nyu.py) 脚本来解压和组织数据到所需的格式

```bash
python tools/dataset_converters/nyu.py nyu.zip
```
4 changes: 3 additions & 1 deletion mmseg/datasets/__init__.py
Original file line number Diff line number Diff line change
Expand Up @@ -19,6 +19,7 @@
from .loveda import LoveDADataset
from .mapillary import MapillaryDataset_v1, MapillaryDataset_v2
from .night_driving import NightDrivingDataset
from .nyu import NYUDataset
from .pascal_context import PascalContextDataset, PascalContextDataset59
from .potsdam import PotsdamDataset
from .refuge import REFUGEDataset
Expand Down Expand Up @@ -58,5 +59,6 @@
'SynapseDataset', 'REFUGEDataset', 'MapillaryDataset_v1',
'MapillaryDataset_v2', 'Albu', 'LEVIRCDDataset',
'LoadMultipleRSImageFromFile', 'LoadSingleRSImageFromFile',
'ConcatCDInput', 'BaseCDDataset', 'DSDLSegDataset', 'BDD100KDataset'
'ConcatCDInput', 'BaseCDDataset', 'DSDLSegDataset', 'BDD100KDataset',
'NYUDataset'
]
123 changes: 123 additions & 0 deletions mmseg/datasets/nyu.py
Original file line number Diff line number Diff line change
@@ -0,0 +1,123 @@
# Copyright (c) OpenMMLab. All rights reserved.
import os.path as osp
from typing import List

import mmengine.fileio as fileio

from mmseg.registry import DATASETS
from .basesegdataset import BaseSegDataset


@DATASETS.register_module()
class NYUDataset(BaseSegDataset):
"""NYU depth estimation dataset. The file structure should be.

.. code-block:: none

├── data
│ ├── nyu
│ │ ├── images
│ │ │ ├── train
│ │ │ │ ├── scene_xxx.jpg
│ │ │ │ ├── ...
│ │ │ ├── test
│ │ ├── annotations
│ │ │ ├── train
│ │ │ │ ├── scene_xxx.png
│ │ │ │ ├── ...
│ │ │ ├── test

Args:
ann_file (str): Annotation file path. Defaults to ''.
metainfo (dict, optional): Meta information for dataset, such as
specify classes to load. Defaults to None.
data_root (str, optional): The root directory for ``data_prefix`` and
``ann_file``. Defaults to None.
data_prefix (dict, optional): Prefix for training data. Defaults to
dict(img_path='images', depth_map_path='annotations').
img_suffix (str): Suffix of images. Default: '.jpg'
seg_map_suffix (str): Suffix of segmentation maps. Default: '.png'
filter_cfg (dict, optional): Config for filter data. Defaults to None.
indices (int or Sequence[int], optional): Support using first few
data in annotation file to facilitate training/testing on a smaller
dataset. Defaults to None which means using all ``data_infos``.
serialize_data (bool, optional): Whether to hold memory using
serialized objects, when enabled, data loader workers can use
shared RAM from master process instead of making a copy. Defaults
to True.
pipeline (list, optional): Processing pipeline. Defaults to [].
test_mode (bool, optional): ``test_mode=True`` means in test phase.
Defaults to False.
lazy_init (bool, optional): Whether to load annotation during
instantiation. In some cases, such as visualization, only the meta
information of the dataset is needed, which is not necessary to
load annotation file. ``Basedataset`` can skip load annotations to
save time by set ``lazy_init=True``. Defaults to False.
max_refetch (int, optional): If ``Basedataset.prepare_data`` get a
None img. The maximum extra number of cycles to get a valid
image. Defaults to 1000.
ignore_index (int): The label index to be ignored. Default: 255
reduce_zero_label (bool): Whether to mark label zero as ignored.
Default to False.
backend_args (dict, Optional): Arguments to instantiate a file backend.
See https://mmengine.readthedocs.io/en/latest/api/fileio.htm
for details. Defaults to None.
Notes: mmcv>=2.0.0rc4, mmengine>=0.2.0 required.
"""
METAINFO = dict(
classes=('printer_room', 'bathroom', 'living_room', 'study',
'conference_room', 'study_room', 'kitchen', 'home_office',
'bedroom', 'dinette', 'playroom', 'indoor_balcony',
'laundry_room', 'basement', 'excercise_room', 'foyer',
'home_storage', 'cafe', 'furniture_store', 'office_kitchen',
'student_lounge', 'dining_room', 'reception_room',
'computer_lab', 'classroom', 'office', 'bookstore'))

def __init__(self,
data_prefix=dict(
img_path='images', depth_map_path='annotations'),
img_suffix='.jpg',
depth_map_suffix='.png',
**kwargs) -> None:
super().__init__(
data_prefix=data_prefix,
img_suffix=img_suffix,
seg_map_suffix=depth_map_suffix,
**kwargs)

def _get_category_id_from_filename(self, image_fname: str) -> int:
"""Retrieve the category ID from the given image filename."""
image_fname = osp.basename(image_fname)
position = image_fname.find(next(filter(str.isdigit, image_fname)), 0)
categoty_name = image_fname[:position - 1]
if categoty_name not in self._metainfo['classes']:
return -1
else:
return self._metainfo['classes'].index(categoty_name)

def load_data_list(self) -> List[dict]:
"""Load annotation from directory or annotation file.

Returns:
list[dict]: All data info of dataset.
"""
data_list = []
img_dir = self.data_prefix.get('img_path', None)
ann_dir = self.data_prefix.get('depth_map_path', None)

_suffix_len = len(self.img_suffix)
for img in fileio.list_dir_or_file(
dir_path=img_dir,
list_dir=False,
suffix=self.img_suffix,
recursive=True,
backend_args=self.backend_args):
data_info = dict(img_path=osp.join(img_dir, img))
if ann_dir is not None:
depth_map = img[:-_suffix_len] + self.seg_map_suffix
data_info['depth_map_path'] = osp.join(ann_dir, depth_map)
data_info['seg_fields'] = []
data_info['category_id'] = self._get_category_id_from_filename(img)
data_list.append(data_info)
data_list = sorted(data_list, key=lambda x: x['img_path'])
return data_list
6 changes: 3 additions & 3 deletions mmseg/datasets/transforms/__init__.py
Original file line number Diff line number Diff line change
Expand Up @@ -2,8 +2,8 @@
from .formatting import PackSegInputs
from .loading import (LoadAnnotations, LoadBiomedicalAnnotation,
LoadBiomedicalData, LoadBiomedicalImageFromFile,
LoadImageFromNDArray, LoadMultipleRSImageFromFile,
LoadSingleRSImageFromFile)
LoadDepthAnnotation, LoadImageFromNDArray,
LoadMultipleRSImageFromFile, LoadSingleRSImageFromFile)
# yapf: disable
from .transforms import (CLAHE, AdjustGamma, Albu, BioMedical3DPad,
BioMedical3DRandomCrop, BioMedical3DRandomFlip,
Expand All @@ -24,5 +24,5 @@
'ResizeShortestEdge', 'BioMedicalGaussianNoise', 'BioMedicalGaussianBlur',
'BioMedical3DRandomFlip', 'BioMedicalRandomGamma', 'BioMedical3DPad',
'RandomRotFlip', 'Albu', 'LoadSingleRSImageFromFile', 'ConcatCDInput',
'LoadMultipleRSImageFromFile'
'LoadMultipleRSImageFromFile', 'LoadDepthAnnotation'
]
5 changes: 5 additions & 0 deletions mmseg/datasets/transforms/formatting.py
Original file line number Diff line number Diff line change
Expand Up @@ -92,6 +92,11 @@ def transform(self, results: dict) -> dict:
...].astype(np.int64)))
data_sample.set_data(dict(gt_edge_map=PixelData(**gt_edge_data)))

if 'gt_depth_map' in results:
gt_depth_data = dict(
data=to_tensor(results['gt_depth_map'][None, ...]))
data_sample.set_data(dict(gt_depth_map=PixelData(**gt_depth_data)))

img_meta = {}
for key in self.meta_keys:
if key in results:
Expand Down
74 changes: 74 additions & 0 deletions mmseg/datasets/transforms/loading.py
Original file line number Diff line number Diff line change
Expand Up @@ -625,3 +625,77 @@ def __repr__(self):
repr_str = (f'{self.__class__.__name__}('
f'to_float32={self.to_float32})')
return repr_str


@TRANSFORMS.register_module()
class LoadDepthAnnotation(BaseTransform):
"""Load ``depth_map`` annotation provided by depth estimation dataset.

The annotation format is as the following:

.. code-block:: python

{
'gt_depth_map': np.ndarray [Y, X]
}

Required Keys:

- seg_depth_path

Added Keys:

- gt_depth_map (np.ndarray): Depth map with shape (Y, X) by
default, and data type is float32 if set to_float32 = True.

Args:
decode_backend (str): The data decoding backend type. Options are
'numpy', 'nifti', and 'cv2'. Defaults to 'cv2'.
to_float32 (bool): Whether to convert the loaded depth map to a float32
numpy array. If set to False, the loaded image is an uint16 array.
Defaults to True.
depth_rescale_factor (float): Factor to rescale the depth value to
limit the range. Defaults to 1.0.
backend_args (dict, Optional): Arguments to instantiate a file backend.
See :class:`mmengine.fileio` for details.
Defaults to None.
Notes: mmcv>=2.0.0rc4, mmengine>=0.2.0 required.
"""

def __init__(self,
decode_backend: str = 'cv2',
to_float32: bool = True,
depth_rescale_factor: float = 1.0,
backend_args: Optional[dict] = None) -> None:
super().__init__()
self.decode_backend = decode_backend
self.to_float32 = to_float32
self.depth_rescale_factor = depth_rescale_factor
self.backend_args = backend_args.copy() if backend_args else None

def transform(self, results: Dict) -> Dict:
"""Functions to load depth map.

Args:
results (dict): Result dict from :obj:``mmcv.BaseDataset``.

Returns:
dict: The dict contains loaded depth map.
"""
data_bytes = fileio.get(results['depth_map_path'], self.backend_args)
gt_depth_map = datafrombytes(data_bytes, backend=self.decode_backend)

if self.to_float32:
gt_depth_map = gt_depth_map.astype(np.float32)

gt_depth_map *= self.depth_rescale_factor
results['gt_depth_map'] = gt_depth_map
results['seg_fields'].append('gt_depth_map')
return results

def __repr__(self):
repr_str = (f'{self.__class__.__name__}('
f"decode_backend='{self.decode_backend}', "
f'to_float32={self.to_float32}, '
f'backend_args={self.backend_args})')
return repr_str
6 changes: 5 additions & 1 deletion mmseg/utils/io.py
Original file line number Diff line number Diff line change
Expand Up @@ -3,6 +3,7 @@
import io
import pickle

import cv2
import numpy as np


Expand All @@ -12,7 +13,7 @@ def datafrombytes(content: bytes, backend: str = 'numpy') -> np.ndarray:
Args:
content (bytes): The data bytes got from files or other streams.
backend (str): The data decoding backend type. Options are 'numpy',
'nifti' and 'pickle'. Defaults to 'numpy'.
'nifti', 'cv2' and 'pickle'. Defaults to 'numpy'.

Returns:
numpy.ndarray: Loaded data array.
Expand All @@ -33,6 +34,9 @@ def datafrombytes(content: bytes, backend: str = 'numpy') -> np.ndarray:
data = Nifti1Image.from_bytes(data.to_bytes()).get_fdata()
elif backend == 'numpy':
data = np.load(f)
elif backend == 'cv2':
data = np.frombuffer(f.read(), dtype=np.uint16)
data = cv2.imdecode(data, 2)
else:
raise ValueError
return data
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
13 changes: 12 additions & 1 deletion tests/test_datasets/test_dataset.py
Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@
CityscapesDataset, COCOStuffDataset,
DecathlonDataset, DSDLSegDataset, ISPRSDataset,
LIPDataset, LoveDADataset, MapillaryDataset_v1,
MapillaryDataset_v2, PascalVOCDataset,
MapillaryDataset_v2, NYUDataset, PascalVOCDataset,
PotsdamDataset, REFUGEDataset, SynapseDataset,
iSAIDDataset)
from mmseg.registry import DATASETS
Expand Down Expand Up @@ -462,3 +462,14 @@ def test_dsdlseg_dataset():
assert len(dataset.metainfo['classes']) == 21
else:
ImportWarning('Package `dsdl` is not installed.')


def test_nyu_dataset():
dataset = NYUDataset(
data_root='tests/data/pseudo_nyu_dataset',
data_prefix=dict(img_path='images', depth_map_path='annotations'),
)
assert len(dataset) == 1
data = dataset[0]
assert data.get('depth_map_path', None) is not None
assert data.get('category_id', -1) == 26
21 changes: 19 additions & 2 deletions tests/test_datasets/test_loading.py
Original file line number Diff line number Diff line change
Expand Up @@ -7,10 +7,11 @@
import numpy as np
from mmcv.transforms import LoadImageFromFile

from mmseg.datasets.transforms import (LoadAnnotations,
LoadBiomedicalAnnotation,
from mmseg.datasets.transforms import LoadAnnotations # noqa
from mmseg.datasets.transforms import (LoadBiomedicalAnnotation,
LoadBiomedicalData,
LoadBiomedicalImageFromFile,
LoadDepthAnnotation,
LoadImageFromNDArray)


Expand Down Expand Up @@ -276,3 +277,19 @@ def test_load_biomedical_data(self):
"decode_backend='numpy', "
'to_xyz=False, '
'backend_args=None)')

def test_load_depth_annotation(self):
input_results = dict(
img_path='tests/data/pseudo_nyu_dataset/images/'
'bookstore_0001d_00001.jpg',
depth_map_path='tests/data/pseudo_nyu_dataset/'
'annotations/bookstore_0001d_00001.png',
category_id=-1,
seg_fields=[])
transform = LoadDepthAnnotation(depth_rescale_factor=0.001)
results = transform(input_results)
assert 'gt_depth_map' in results
assert results['gt_depth_map'].shape[:2] == mmcv.imread(
input_results['depth_map_path']).shape[:2]
assert results['gt_depth_map'].dtype == np.float32
assert 'gt_depth_map' in results['seg_fields']
Loading