Repositories list

• COPASI

  Public
  COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.

  chemistrydynamicsmodeling+ 6systems-biologybiochemistrychemical-kineticskineticscopasisimulation

  C++

  •

  Artistic License 2.0

  •28•92•1•0•Updated Oct 15, 2024Oct 15, 2024

• model_replicator

  Public
  a tool to replicate one SBML/COPASI model into a set of replicas

  Python

  •

  Artistic License 2.0

  •0•0•0•0•Updated Oct 11, 2024Oct 11, 2024

• basico

  Public
  A simplified python interface to COPASI.

  pythoncopasi

  Python

  •

  Artistic License 2.0

  •5•19•8•0•Updated Oct 11, 2024Oct 11, 2024

• COPASI.js

  Public
  Emscripten COPASI Javascript Bindings

  nodejscopasi

  C++

  •

  BSD 2-Clause "Simplified" License

  •0•1•1•0•Updated Oct 10, 2024Oct 10, 2024

• copasi.github.io

  Public
  COPASI Website

  HTML

  •1•0•1•0•Updated Oct 9, 2024Oct 9, 2024

• denbi-modsim.github.io

  Public
  de.NBI ModSim web site

  HTML

  •1•0•0•0•Updated Aug 6, 2024Aug 6, 2024

• cloud-copasi

  Public
  cloud-copasi is a web service to manage COPASI simulation tasks in HPC facilities and compute clouds, such as condor, AWS, etc.

  Component Pascal

  •

  GNU General Public License v3.0

  •1•5•13•1•Updated May 20, 2024May 20, 2024

• build-system

  Public
  Shell

  •

  Artistic License 2.0

  •0•0•1•1•Updated May 20, 2024May 20, 2024

• copasi-dependencies

  Public
  Collection of OpenSource libraries to simplify COPASI build

  combinesbmlnuml+ 5sedmlcmakeqwtcopasimml-widget

  C++

  •3•7•6•0•Updated May 7, 2024May 7, 2024

• python-copasi-testsuite

  Public
  Python COPASI testing

  pythontesting-toolscopasi

  Component Pascal

  •0•1•0•0•Updated Apr 24, 2024Apr 24, 2024

• python-petab-importer

  Public
  PEtab --> COPASI importer

  pythoncopasipetab

  Python

  •

  Artistic License 2.0

  •0•3•1•0•Updated Apr 4, 2024Apr 4, 2024

• copasi-api

  Public
  A more general, higher level, C++ API which can also be leveraged by other programming languages.

  copasi

  C++

  •

  Artistic License 2.0

  •1•2•0•0•Updated Jun 10, 2022Jun 10, 2022

• shinyCOPASI

  Public
  ShinyCOPASI is R-based web interface for COPASI.

  R

  •0•0•1•0•Updated Dec 23, 2021Dec 23, 2021

• cytoscape-copasi

  Public
  Example Cytoscape 3 plugin that imports COPASI files

  Java

  •1•0•0•0•Updated Jul 12, 2021Jul 12, 2021

• aws-lambda-copasi

  Public
  A sample project using the python-api from a AWS lambda

  Python

  •0•0•0•0•Updated Dec 4, 2020Dec 4, 2020

• epidemic-travel-model

  Public
  Example code to automatically generate epidemic patch model (SEIR, in this case) with commuter travel events.

  Component Pascal

  •

  Apache License 2.0

  •0•4•0•0•Updated Feb 7, 2020Feb 7, 2020

• bugzillaWebserviceHook

  Public
  A simple hook which converts push events into Bugzilla Comments

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Jun 6, 2019Jun 6, 2019

• version-check

  Public
  PHP

  •0•0•0•0•Updated Jun 5, 2019Jun 5, 2019

• JCMC

  Public
  JigCell Model Connector for hierarchical reaction network models

  Java

  •0•2•5•0•Updated Dec 4, 2017Dec 4, 2017

• MSMB

  Public
  JigCell MultiState Model Builder

  Java

  •0•1•2•0•Updated May 1, 2016May 1, 2016

• ADAM.private

  Public
  C++

  •0•0•0•0•Updated Feb 16, 2016Feb 16, 2016

• condor-copasi

  Public
  Automatically exported from code.google.com/p/condor-copasi

  Component Pascal

  •

  Artistic License 2.0

  •1•3•2•0•Updated Apr 20, 2015Apr 20, 2015