Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Generalize handling of chunked array types #7019

Merged
merged 189 commits into from
May 18, 2023
Merged

Generalize handling of chunked array types #7019

merged 189 commits into from
May 18, 2023

Commits on Sep 10, 2022

  1. generalise chunk methods to allow cubed

    @TomNicholas
    TomNicholas committed Sep 10, 2022
    Configuration menu
    Copy the full SHA
    15fc2b8 View commit details
    Browse the repository at this point in the history

  2. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci
    pre-commit-ci[bot] committed Sep 10, 2022
    Configuration menu
    Copy the full SHA
    5e05b71 View commit details
    Browse the repository at this point in the history

  3. fic typing typo

    @TomNicholas
    TomNicholas committed Sep 10, 2022
    Configuration menu
    Copy the full SHA
    cff89ee View commit details
    Browse the repository at this point in the history

  4. Merge branch 'cubed_integration' of https:/TomNicholas/xa… 

    …rray into cubed_integration
    @TomNicholas
    TomNicholas committed Sep 10, 2022
    Configuration menu
    Copy the full SHA
    039973b View commit details
    Browse the repository at this point in the history

Commits on Sep 11, 2022

  1. fixed circular import

    @TomNicholas
    TomNicholas committed Sep 11, 2022
    Configuration menu
    Copy the full SHA
    60d44bc View commit details
    Browse the repository at this point in the history

  2. fix some mypy errors

    @TomNicholas
    TomNicholas committed Sep 11, 2022
    Configuration menu
    Copy the full SHA
    5ddba7e View commit details
    Browse the repository at this point in the history

  3. added cubed to mypy ignore list

    @TomNicholas
    TomNicholas committed Sep 11, 2022
    Configuration menu
    Copy the full SHA
    37d0d66 View commit details
    Browse the repository at this point in the history

  4. Merge branch 'main' into cubed_integration

    @TomNicholas
    TomNicholas committed Sep 11, 2022
    Configuration menu
    Copy the full SHA
    67d7efc View commit details
    Browse the repository at this point in the history

Commits on Sep 12, 2022

  1. simplify __array_ufunc__ check

    @TomNicholas
    TomNicholas committed Sep 12, 2022
    Configuration menu
    Copy the full SHA
    cdcb3fb View commit details
    Browse the repository at this point in the history

  2. Revert "simplify __array_ufunc__ check" as I pushed to wrong branch 

    This reverts commit cdcb3fb.
    @TomNicholas
    TomNicholas committed Sep 12, 2022
    Configuration menu
    Copy the full SHA
    73e4563 View commit details
    Browse the repository at this point in the history

Commits on Sep 20, 2022

  1. update cubed array type

    @TomNicholas
    TomNicholas committed Sep 20, 2022
    Configuration menu
    Copy the full SHA
    5995685 View commit details
    Browse the repository at this point in the history

  2. Merge branch 'main' into cubed_integration

    @TomNicholas
    TomNicholas committed Sep 20, 2022
    Configuration menu
    Copy the full SHA
    46223ae View commit details
    Browse the repository at this point in the history

  3. fix missed conflict

    @TomNicholas
    TomNicholas committed Sep 20, 2022
    Configuration menu
    Copy the full SHA
    320b09f View commit details
    Browse the repository at this point in the history

  4. sketch for ChunkManager adapter class

    @TomNicholas
    TomNicholas committed Sep 20, 2022
    Configuration menu
    Copy the full SHA
    3facfd6 View commit details
    Browse the repository at this point in the history

  5. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci
    pre-commit-ci[bot] committed Sep 20, 2022
    Configuration menu
    Copy the full SHA
    c616a85 View commit details
    Browse the repository at this point in the history

Commits on Sep 23, 2022

  1. Remove erroneous docstring about usage of map_blocks 

    Co-authored-by: Deepak Cherian <[email protected]>
    @TomNicholas @dcherian
    TomNicholas and dcherian authored Sep 23, 2022
    Configuration menu
    Copy the full SHA
    ecabaa4 View commit details
    Browse the repository at this point in the history

  2. apply_ufunc -> apply_gufunc 

    Co-authored-by: Deepak Cherian <[email protected]>
    @TomNicholas @dcherian
    TomNicholas and dcherian authored Sep 23, 2022
    Configuration menu
    Copy the full SHA
    e53a588 View commit details
    Browse the repository at this point in the history

  3. chunk -> from_array 

    Co-authored-by: Deepak Cherian <[email protected]>
    @TomNicholas @dcherian
    TomNicholas and dcherian authored Sep 23, 2022
    Configuration menu
    Copy the full SHA
    fe21edd View commit details
    Browse the repository at this point in the history

  4. remove staticmethods

    @TomNicholas
    TomNicholas committed Sep 23, 2022
    Configuration menu
    Copy the full SHA
    3f6aedc View commit details
    Browse the repository at this point in the history

  5. attempt to type methods of ABC

    @TomNicholas
    TomNicholas committed Sep 23, 2022
    Configuration menu
    Copy the full SHA
    ea8f482 View commit details
    Browse the repository at this point in the history

  6. from_array

    @TomNicholas
    TomNicholas committed Sep 23, 2022
    Configuration menu
    Copy the full SHA
    c49ab8e View commit details
    Browse the repository at this point in the history

  7. attempt to specify types

    @TomNicholas
    TomNicholas committed Sep 23, 2022
    Configuration menu
    Copy the full SHA
    26d1868 View commit details
    Browse the repository at this point in the history

Commits on Sep 26, 2022

  1. method for checking array type

    @TomNicholas
    TomNicholas committed Sep 26, 2022
    Configuration menu
    Copy the full SHA
    e9b4a33 View commit details
    Browse the repository at this point in the history

Commits on Oct 27, 2022

  1. Merge branch 'main' into pr/7019

    @Illviljan
    Illviljan committed Oct 27, 2022
    Configuration menu
    Copy the full SHA
    3a43b00 View commit details
    Browse the repository at this point in the history

  2. Update pyproject.toml

    @Illviljan
    Illviljan committed Oct 27, 2022
    Configuration menu
    Copy the full SHA
    c7c9589 View commit details
    Browse the repository at this point in the history

Commits on Jan 21, 2023

  1. Merge branch 'main' into cubed_integration

    @TomNicholas
    TomNicholas authored Jan 21, 2023
    Configuration menu
    Copy the full SHA
    fc051e3 View commit details
    Browse the repository at this point in the history

  2. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci
    pre-commit-ci[bot] committed Jan 21, 2023
    Configuration menu
    Copy the full SHA
    56e9d0f View commit details
    Browse the repository at this point in the history

Commits on Jan 22, 2023

  1. fixed import errors

    @TomNicholas
    TomNicholas committed Jan 22, 2023
    Configuration menu
    Copy the full SHA
    3b16cca View commit details
    Browse the repository at this point in the history

  2. generalize .chunk method kwargs

    @TomNicholas
    TomNicholas committed Jan 22, 2023
    Configuration menu
    Copy the full SHA
    7ac3323 View commit details
    Browse the repository at this point in the history

  3. used dask functions in dask chunkmanager

    @TomNicholas
    TomNicholas committed Jan 22, 2023
    Configuration menu
    Copy the full SHA
    e732b87 View commit details
    Browse the repository at this point in the history

  4. Merge branch 'cubed_integration' of https:/TomNicholas/xa… 

    …rray into cubed_integration
    @TomNicholas
    TomNicholas committed Jan 22, 2023
    Configuration menu
    Copy the full SHA
    68930eb View commit details
    Browse the repository at this point in the history

  5. define signatures for apply_gufunc, blockwise, map_blocks

    @TomNicholas
    TomNicholas committed Jan 22, 2023
    Configuration menu
    Copy the full SHA
    8442e1f View commit details
    Browse the repository at this point in the history

  6. prototype function to detect which parallel backend to use

    @TomNicholas
    TomNicholas committed Jan 22, 2023
    Configuration menu
    Copy the full SHA
    3717431 View commit details
    Browse the repository at this point in the history

Commits on Mar 6, 2023

  1. Merge branch 'main' into cubed_integration

    @TomNicholas
    TomNicholas committed Mar 6, 2023
    Configuration menu
    Copy the full SHA
    78d8969 View commit details
    Browse the repository at this point in the history

  2. add cubed.apply_gufunc

    @TomNicholas
    TomNicholas committed Mar 6, 2023
    Configuration menu
    Copy the full SHA
    7ac6531 View commit details
    Browse the repository at this point in the history

  3. ruffify

    @TomNicholas
    TomNicholas committed Mar 6, 2023
    Configuration menu
    Copy the full SHA
    e423bfb View commit details
    Browse the repository at this point in the history

  4. add rechunk and compute methods for cubed

    @TomNicholas
    TomNicholas committed Mar 6, 2023
    Configuration menu
    Copy the full SHA
    149db9d View commit details
    Browse the repository at this point in the history

  5. xr.apply_ufunc now dispatches to chunkmanager.apply_gufunc

    @TomNicholas
    TomNicholas committed Mar 6, 2023
    Configuration menu
    Copy the full SHA
    280c563 View commit details
    Browse the repository at this point in the history

  6. CubedManager.chunks

    @TomNicholas
    TomNicholas committed Mar 6, 2023
    Configuration menu
    Copy the full SHA
    42186e7 View commit details
    Browse the repository at this point in the history

  7. attempt to keep dask and cubed imports lazy

    @TomNicholas
    TomNicholas committed Mar 6, 2023
    Configuration menu
    Copy the full SHA
    103a755 View commit details
    Browse the repository at this point in the history

  8. generalize idxmax

    @TomNicholas
    TomNicholas committed Mar 6, 2023
    Configuration menu
    Copy the full SHA
    f2bce3d View commit details
    Browse the repository at this point in the history

  9. move unify_chunks import to ChunkManager

    @TomNicholas
    TomNicholas committed Mar 6, 2023
    Configuration menu
    Copy the full SHA
    f09947d View commit details
    Browse the repository at this point in the history

  10. generalize Dataset.load()

    @TomNicholas
    TomNicholas committed Mar 6, 2023
    Configuration menu
    Copy the full SHA
    e760f10 View commit details
    Browse the repository at this point in the history

  11. check explicitly for chunks attribute instead of hard-coding cubed

    @TomNicholas
    TomNicholas committed Mar 6, 2023
    Configuration menu
    Copy the full SHA
    b1a4e35 View commit details
    Browse the repository at this point in the history

  12. better function names

    @TomNicholas
    TomNicholas committed Mar 6, 2023
    Configuration menu
    Copy the full SHA
    5320f4d View commit details
    Browse the repository at this point in the history

  13. add cubed version of unify_chunks

    @TomNicholas
    TomNicholas committed Mar 6, 2023
    Configuration menu
    Copy the full SHA
    45ed5d2 View commit details
    Browse the repository at this point in the history

  14. recognize wrapped duck dask arrays (e.g. pint wrapping dask)

    @TomNicholas
    TomNicholas committed Mar 6, 2023
    Configuration menu
    Copy the full SHA
    eec096b View commit details
    Browse the repository at this point in the history

Commits on Mar 7, 2023

  1. add some tests for fetching ChunkManagers

    @TomNicholas
    TomNicholas committed Mar 7, 2023
    Configuration menu
    Copy the full SHA
    c64ff5f View commit details
    Browse the repository at this point in the history

Commits on Mar 9, 2023

  1. add from_array_kwargs to open_dataset

    @TomNicholas
    TomNicholas committed Mar 9, 2023
    Configuration menu
    Copy the full SHA
    8a37905 View commit details
    Browse the repository at this point in the history

  2. add from_array_kwargs to open_zarr

    @TomNicholas
    TomNicholas committed Mar 9, 2023
    Configuration menu
    Copy the full SHA
    989d6bb View commit details
    Browse the repository at this point in the history

  3. pipe constructors through chunkmanager

    @TomNicholas
    TomNicholas committed Mar 9, 2023
    Configuration menu
    Copy the full SHA
    8c7fe79 View commit details
    Browse the repository at this point in the history

Commits on Mar 10, 2023

  1. generalize map_blocks inside coding

    @TomNicholas
    TomNicholas committed Mar 10, 2023
    Configuration menu
    Copy the full SHA
    0222b55 View commit details
    Browse the repository at this point in the history

Commits on Mar 13, 2023

  1. Merge branch 'main' into cubed_integration

    @TomNicholas
    TomNicholas authored Mar 13, 2023
    Configuration menu
    Copy the full SHA
    9d6cf6b View commit details
    Browse the repository at this point in the history

  2. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci
    pre-commit-ci[bot] committed Mar 13, 2023
    Configuration menu
    Copy the full SHA
    afc6abc View commit details
    Browse the repository at this point in the history

  3. fixed full_like

    @TomNicholas
    TomNicholas committed Mar 13, 2023
    Configuration menu
    Copy the full SHA
    2c0cc26 View commit details
    Browse the repository at this point in the history

  4. Merge branch 'cubed_integration' of https:/TomNicholas/xa… 

    …rray into cubed_integration
    @TomNicholas
    TomNicholas committed Mar 13, 2023
    Configuration menu
    Copy the full SHA
    1a255cf View commit details
    Browse the repository at this point in the history

  5. add from_array_kwargs to open_zarr

    @TomNicholas
    TomNicholas committed Mar 13, 2023
    Configuration menu
    Copy the full SHA
    c398d98 View commit details
    Browse the repository at this point in the history

Commits on Mar 14, 2023

  1. don't import dask.tokenize

    @TomNicholas
    TomNicholas committed Mar 14, 2023
    Configuration menu
    Copy the full SHA
    598bf12 View commit details
    Browse the repository at this point in the history

  2. fix bugs with passing from_array_kwargs down

    @TomNicholas
    TomNicholas committed Mar 14, 2023
    Configuration menu
    Copy the full SHA
    7bef188 View commit details
    Browse the repository at this point in the history

  3. generalise reductions by adding to chunkmanager

    @TomNicholas
    TomNicholas committed Mar 14, 2023
    Configuration menu
    Copy the full SHA
    7af5395 View commit details
    Browse the repository at this point in the history

  4. moved nanfirst/nanlast to duck_array_ops from dask_array_ops

    @TomNicholas
    TomNicholas committed Mar 14, 2023
    Configuration menu
    Copy the full SHA
    287e96c View commit details
    Browse the repository at this point in the history

  5. generalize interp

    @TomNicholas
    TomNicholas committed Mar 14, 2023
    Configuration menu
    Copy the full SHA
    8bbc141 View commit details
    Browse the repository at this point in the history

  6. generalized chunk_hint function inside indexing

    @TomNicholas
    TomNicholas committed Mar 14, 2023
    Configuration menu
    Copy the full SHA
    6cfe9fa View commit details
    Browse the repository at this point in the history

  7. DaskIndexingAdapter->ChunkedIndexingAdapter

    @TomNicholas
    TomNicholas committed Mar 14, 2023
    Configuration menu
    Copy the full SHA
    4ca044b View commit details
    Browse the repository at this point in the history

  8. Merge branch 'main' into cubed_integration

    @TomNicholas
    TomNicholas authored Mar 14, 2023
    Configuration menu
    Copy the full SHA
    8ed5ed6 View commit details
    Browse the repository at this point in the history

  9. Revert "DaskIndexingAdapter->ChunkedIndexingAdapter" 

    This reverts commit 4ca044b.
    @TomNicholas
    TomNicholas committed Mar 14, 2023
    Configuration menu
    Copy the full SHA
    2a4c38b View commit details
    Browse the repository at this point in the history

  10. pass cubed-related kwargs down through to_zarr by adding .store to Ch… 

    …unkManager
    @TomNicholas
    TomNicholas committed Mar 14, 2023
    Configuration menu
    Copy the full SHA
    45a4c98 View commit details
    Browse the repository at this point in the history

  11. fix typing_extensions on py3.9

    @TomNicholas
    TomNicholas committed Mar 14, 2023
    Configuration menu
    Copy the full SHA
    dee5b33 View commit details
    Browse the repository at this point in the history

  12. fix ImportError with cubed array type

    @TomNicholas
    TomNicholas committed Mar 14, 2023
    Configuration menu
    Copy the full SHA
    176d7fa View commit details
    Browse the repository at this point in the history

  13. give up trying to import TypeAlias in CI

    @TomNicholas
    TomNicholas committed Mar 14, 2023
    Configuration menu
    Copy the full SHA
    9e58d6d View commit details
    Browse the repository at this point in the history

  14. fix import of T_Chunks

    @TomNicholas
    TomNicholas committed Mar 14, 2023
    Configuration menu
    Copy the full SHA
    a6219a0 View commit details
    Browse the repository at this point in the history

  15. fix no_implicit_optional warnings

    @TomNicholas
    TomNicholas committed Mar 14, 2023
    Configuration menu
    Copy the full SHA
    9f21994 View commit details
    Browse the repository at this point in the history

  16. don't define CubedManager if cubed can't be imported

    @TomNicholas
    TomNicholas committed Mar 14, 2023
    Configuration menu
    Copy the full SHA
    eb7bb0b View commit details
    Browse the repository at this point in the history

  17. fix local mypy errors

    @TomNicholas
    TomNicholas committed Mar 14, 2023
    Configuration menu
    Copy the full SHA
    57733de View commit details
    Browse the repository at this point in the history

Commits on Mar 15, 2023

  1. don't explicitly pass enforce_ndim into dask.array.map_blocks

    @TomNicholas
    TomNicholas committed Mar 15, 2023
    Configuration menu
    Copy the full SHA
    4c58b28 View commit details
    Browse the repository at this point in the history

  2. fix drop_axis default

    @TomNicholas
    TomNicholas committed Mar 15, 2023
    Configuration menu
    Copy the full SHA
    d07830c View commit details
    Browse the repository at this point in the history

Commits on Mar 16, 2023

  1. Merge branch 'main' into cubed_integration

    @TomNicholas
    TomNicholas committed Mar 16, 2023
    Configuration menu
    Copy the full SHA
    c1bf040 View commit details
    Browse the repository at this point in the history

  2. use indexing adapter on cubed arrays too

    @TomNicholas
    TomNicholas committed Mar 16, 2023
    Configuration menu
    Copy the full SHA
    3ae21d9 View commit details
    Browse the repository at this point in the history

  3. use array API-compatible version of astype function

    @TomNicholas
    TomNicholas committed Mar 16, 2023
    Configuration menu
    Copy the full SHA
    7ef0129 View commit details
    Browse the repository at this point in the history

  4. whatsnew

    @TomNicholas
    TomNicholas committed Mar 16, 2023
    Configuration menu
    Copy the full SHA
    ec22963 View commit details
    Browse the repository at this point in the history

  5. document new kwargs

    @TomNicholas
    TomNicholas committed Mar 16, 2023
    Configuration menu
    Copy the full SHA
    4c8d773 View commit details
    Browse the repository at this point in the history

Commits on Mar 21, 2023

  1. add chunkmanager entrypoint

    @TomNicholas
    TomNicholas committed Mar 21, 2023
    Configuration menu
    Copy the full SHA
    f4de577 View commit details
    Browse the repository at this point in the history

  2. move CubedManager to a separate package

    @TomNicholas
    TomNicholas committed Mar 21, 2023
    Configuration menu
    Copy the full SHA
    1cd7283 View commit details
    Browse the repository at this point in the history

  3. guess chunkmanager based on whats available

    @TomNicholas
    TomNicholas committed Mar 21, 2023
    Configuration menu
    Copy the full SHA
    5386711 View commit details
    Browse the repository at this point in the history

Commits on Mar 22, 2023

  1. Merge branch 'main' into cubed_integration

    @TomNicholas
    TomNicholas committed Mar 22, 2023
    Configuration menu
    Copy the full SHA
    6b173de View commit details
    Browse the repository at this point in the history

  2. fix bug with tokenizing

    @TomNicholas
    TomNicholas committed Mar 22, 2023
    Configuration menu
    Copy the full SHA
    c431a5f View commit details
    Browse the repository at this point in the history

  3. adapt tests to emulate existence of entrypoint

    @TomNicholas
    TomNicholas committed Mar 22, 2023
    Configuration menu
    Copy the full SHA
    7ab9047 View commit details
    Browse the repository at this point in the history

  4. use fixture to setup/teardown dummy entrypoint

    @TomNicholas
    TomNicholas committed Mar 22, 2023
    Configuration menu
    Copy the full SHA
    72f8f5f View commit details
    Browse the repository at this point in the history

  5. refactor to make DaskManager unavailable if dask not installed

    @TomNicholas
    TomNicholas committed Mar 22, 2023
    Configuration menu
    Copy the full SHA
    34c6aea View commit details
    Browse the repository at this point in the history

  6. typing

    @TomNicholas
    TomNicholas committed Mar 22, 2023
    Configuration menu
    Copy the full SHA
    fb9466d View commit details
    Browse the repository at this point in the history

  7. Merge branch 'main' into cubed_integration

    @TomNicholas
    TomNicholas committed Mar 22, 2023
    Configuration menu
    Copy the full SHA
    ffd2e21 View commit details
    Browse the repository at this point in the history

  8. move whatsnew to latest xarray version

    @TomNicholas
    TomNicholas committed Mar 22, 2023
    Configuration menu
    Copy the full SHA
    36b2be0 View commit details
    Browse the repository at this point in the history

  9. remove superfluous lines from whatsnew

    @TomNicholas
    TomNicholas committed Mar 22, 2023
    Configuration menu
    Copy the full SHA
    77a1e4e View commit details
    Browse the repository at this point in the history

Commits on Mar 23, 2023

  1. fix bug where zarr backend attempted to use dask when not installed

    @TomNicholas
    TomNicholas committed Mar 23, 2023
    Configuration menu
    Copy the full SHA
    a6222f9 View commit details
    Browse the repository at this point in the history

  2. Remove rogue print statement 

    Co-authored-by: Deepak Cherian <[email protected]>
    @TomNicholas @dcherian
    TomNicholas and dcherian authored Mar 23, 2023
    Configuration menu
    Copy the full SHA
    61fe236 View commit details
    Browse the repository at this point in the history

  3. Merge branch 'cubed_integration' of https:/TomNicholas/xa… 

    …rray into cubed_integration
    @TomNicholas
    TomNicholas committed Mar 23, 2023
    Configuration menu
    Copy the full SHA
    447d1f1 View commit details
    Browse the repository at this point in the history

  4. Clarify what's new 

    Co-authored-by: Deepak Cherian <[email protected]>
    @TomNicholas @dcherian
    TomNicholas and dcherian authored Mar 23, 2023
    Configuration menu
    Copy the full SHA
    a7a6a6e View commit details
    Browse the repository at this point in the history

  5. use monkeypatch to mock registering of dummy chunkmanager

    @TomNicholas
    TomNicholas committed Mar 23, 2023
    Configuration menu
    Copy the full SHA
    aa64996 View commit details
    Browse the repository at this point in the history

  6. Merge branch 'cubed_integration' of https:/TomNicholas/xa… 

    …rray into cubed_integration
    @TomNicholas
    TomNicholas committed Mar 23, 2023
    Configuration menu
    Copy the full SHA
    fec1a13 View commit details
    Browse the repository at this point in the history

  7. more tests for guessing chunkmanager correctly

    @TomNicholas
    TomNicholas committed Mar 23, 2023
    Configuration menu
    Copy the full SHA
    db11947 View commit details
    Browse the repository at this point in the history

  8. raise TypeError if no chunkmanager found for array types

    @TomNicholas
    TomNicholas committed Mar 23, 2023
    Configuration menu
    Copy the full SHA
    2c18df6 View commit details
    Browse the repository at this point in the history

  9. Correct is_chunked_array check 

    Co-authored-by: Deepak Cherian <[email protected]>
    @TomNicholas @dcherian
    TomNicholas and dcherian authored Mar 23, 2023
    Configuration menu
    Copy the full SHA
    2e49154 View commit details
    Browse the repository at this point in the history

Commits on Mar 24, 2023

  1. vendor dask.array.core.normalize_chunks

    @TomNicholas
    TomNicholas committed Mar 24, 2023
    Configuration menu
    Copy the full SHA
    748e90d View commit details
    Browse the repository at this point in the history

  2. Merge branch 'cubed_integration' of https:/TomNicholas/xa… 

    …rray into cubed_integration
    @TomNicholas
    TomNicholas committed Mar 24, 2023
    Configuration menu
    Copy the full SHA
    70804f4 View commit details
    Browse the repository at this point in the history

  3. add default implementation of rechunk in ABC

    @TomNicholas
    TomNicholas committed Mar 24, 2023
    Configuration menu
    Copy the full SHA
    dae2fe4 View commit details
    Browse the repository at this point in the history

  4. remove cubed-specific type check in daskmanager

    @TomNicholas
    TomNicholas committed Mar 24, 2023
    Configuration menu
    Copy the full SHA
    4ef500c View commit details
    Browse the repository at this point in the history

  5. nanfirst->chunked_nanfirst

    @TomNicholas
    TomNicholas committed Mar 24, 2023
    Configuration menu
    Copy the full SHA
    ba66419 View commit details
    Browse the repository at this point in the history

  6. revert adding cubed to NON_NUMPY_SUPPORTED_ARRAY_TYPES

    @TomNicholas
    TomNicholas committed Mar 24, 2023
    Configuration menu
    Copy the full SHA
    7fd4617 View commit details
    Browse the repository at this point in the history

  7. licensing to vendor functions from dask

    @TomNicholas
    TomNicholas committed Mar 24, 2023
    Configuration menu
    Copy the full SHA
    69d77c9 View commit details
    Browse the repository at this point in the history

  8. fix bug

    @TomNicholas
    TomNicholas committed Mar 24, 2023
    Configuration menu
    Copy the full SHA
    8337857 View commit details
    Browse the repository at this point in the history

  9. ignore mypy error

    @TomNicholas
    TomNicholas committed Mar 24, 2023
    Configuration menu
    Copy the full SHA
    9850a46 View commit details
    Browse the repository at this point in the history

Commits on Mar 29, 2023

  1. separate chunk_manager kwarg from from_array_kwargs dict

    @TomNicholas
    TomNicholas committed Mar 29, 2023
    Configuration menu
    Copy the full SHA
    488fd5b View commit details
    Browse the repository at this point in the history

  2. rename kwarg to chunked_array_type

    @TomNicholas
    TomNicholas committed Mar 29, 2023
    Configuration menu
    Copy the full SHA
    00bcf6c View commit details
    Browse the repository at this point in the history

Commits on Mar 30, 2023

  1. Merge branch 'main' into cubed_integration

    @TomNicholas
    TomNicholas authored Mar 30, 2023
    Configuration menu
    Copy the full SHA
    ff1f8ab View commit details
    Browse the repository at this point in the history

Commits on Apr 5, 2023

  1. refactor from_array_kwargs in .chunk ready for deprecation

    @TomNicholas
    TomNicholas committed Apr 5, 2023
    Configuration menu
    Copy the full SHA
    844726d View commit details
    Browse the repository at this point in the history

  2. print statements in test so I can comment on them

    @TomNicholas
    TomNicholas committed Apr 5, 2023
    Configuration menu
    Copy the full SHA
    3d56a3d View commit details
    Browse the repository at this point in the history

  3. remove print statements now I've commented on them in PR

    @TomNicholas
    TomNicholas committed Apr 5, 2023
    Configuration menu
    Copy the full SHA
    1952c55 View commit details
    Browse the repository at this point in the history

  4. should fix dask naming tests

    @TomNicholas
    TomNicholas committed Apr 5, 2023
    Configuration menu
    Copy the full SHA
    3ba8d42 View commit details
    Browse the repository at this point in the history

  5. Merge branch 'main' into cubed_integration

    @TomNicholas
    TomNicholas committed Apr 5, 2023
    Configuration menu
    Copy the full SHA
    b15411c View commit details
    Browse the repository at this point in the history

  6. make dask-specific kwargs explicit in from_array

    @TomNicholas
    TomNicholas committed Apr 5, 2023
    Configuration menu
    Copy the full SHA
    53d6094 View commit details
    Browse the repository at this point in the history

Commits on Apr 6, 2023

  1. debugging print statements

    @TomNicholas
    TomNicholas committed Apr 6, 2023
    Configuration menu
    Copy the full SHA
    7dc6581 View commit details
    Browse the repository at this point in the history

  2. Revert "debugging print statements" 

    This reverts commit 7dc6581.
    @TomNicholas
    TomNicholas committed Apr 6, 2023
    Configuration menu
    Copy the full SHA
    fcaf499 View commit details
    Browse the repository at this point in the history

  3. fix gnarly bug with auto-determining chunksizes caused by not referri… 

    …ng to dask.config
    @TomNicholas
    TomNicholas committed Apr 6, 2023
    Configuration menu
    Copy the full SHA
    64df7e8 View commit details
    Browse the repository at this point in the history

  4. hopefully fix broken docstring

    @TomNicholas
    TomNicholas committed Apr 6, 2023
    Configuration menu
    Copy the full SHA
    747ada5 View commit details
    Browse the repository at this point in the history

  5. Revert "make dask-specific kwargs explicit in from_array" 

    This reverts commit 53d6094.
    @TomNicholas
    TomNicholas committed Apr 6, 2023
    Configuration menu
    Copy the full SHA
    9b33ab7 View commit details
    Browse the repository at this point in the history

  6. Merge branch 'main' into cubed_integration

    @TomNicholas
    TomNicholas committed Apr 6, 2023
    Configuration menu
    Copy the full SHA
    c8d5aa1 View commit details
    Browse the repository at this point in the history

  7. show chunksize limit used in failing tests

    @TomNicholas
    TomNicholas committed Apr 6, 2023
    Configuration menu
    Copy the full SHA
    6a7a043 View commit details
    Browse the repository at this point in the history

  8. move lazy indexing adapter up out of chunkmanager code

    @TomNicholas
    TomNicholas committed Apr 6, 2023
    Configuration menu
    Copy the full SHA
    20f92c6 View commit details
    Browse the repository at this point in the history

  9. try upgrading minimum version of dask

    @TomNicholas
    TomNicholas committed Apr 6, 2023
    Configuration menu
    Copy the full SHA
    796a577 View commit details
    Browse the repository at this point in the history

Commits on Apr 11, 2023

  1. Revert "try upgrading minimum version of dask" 

    This reverts commit 796a577.
    @TomNicholas
    TomNicholas committed Apr 11, 2023
    Configuration menu
    Copy the full SHA
    29d0c92 View commit details
    Browse the repository at this point in the history

  2. un-vendor dask.array.core.normalize_chunks

    @TomNicholas
    TomNicholas committed Apr 11, 2023
    Configuration menu
    Copy the full SHA
    031017b View commit details
    Browse the repository at this point in the history

  3. Merge branch 'main' into cubed_integration

    @TomNicholas
    TomNicholas committed Apr 11, 2023
    Configuration menu
    Copy the full SHA
    a8c3413 View commit details
    Browse the repository at this point in the history

Commits on Apr 12, 2023

  1. refactored to all passing ChunkManagerEntrypoint objects directly

    @TomNicholas
    TomNicholas committed Apr 12, 2023
    Configuration menu
    Copy the full SHA
    14a1226 View commit details
    Browse the repository at this point in the history

Commits on Apr 17, 2023

  1. Remove redundant Nones from types 

    Co-authored-by: Illviljan <[email protected]>
    @TomNicholas @Illviljan
    TomNicholas and Illviljan authored Apr 17, 2023
    Configuration menu
    Copy the full SHA
    5dd9d35 View commit details
    Browse the repository at this point in the history

  2. From future import annotations 

    Co-authored-by: Illviljan <[email protected]>
    @TomNicholas @Illviljan
    TomNicholas and Illviljan authored Apr 17, 2023
    Configuration menu
    Copy the full SHA
    5a46294 View commit details
    Browse the repository at this point in the history

  3. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci
    pre-commit-ci[bot] committed Apr 17, 2023
    Configuration menu
    Copy the full SHA
    d6b56c6 View commit details
    Browse the repository at this point in the history

  4. From functools import annotations 

    Co-authored-by: Illviljan <[email protected]>
    @TomNicholas @Illviljan
    TomNicholas and Illviljan authored Apr 17, 2023
    Configuration menu
    Copy the full SHA
    471d22a View commit details
    Browse the repository at this point in the history

  5. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci
    pre-commit-ci[bot] committed Apr 17, 2023
    Configuration menu
    Copy the full SHA
    8378f43 View commit details
    Browse the repository at this point in the history

  6. From future import annotations 

    Co-authored-by: Illviljan <[email protected]>
    @TomNicholas @Illviljan
    TomNicholas and Illviljan authored Apr 17, 2023
    Configuration menu
    Copy the full SHA
    f8b1020 View commit details
    Browse the repository at this point in the history

  7. Merge branch 'main' into cubed_integration

    @TomNicholas
    TomNicholas authored Apr 17, 2023
    Configuration menu
    Copy the full SHA
    907c15b View commit details
    Browse the repository at this point in the history

  8. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci
    pre-commit-ci[bot] committed Apr 17, 2023
    Configuration menu
    Copy the full SHA
    11676ab View commit details
    Browse the repository at this point in the history

Commits on May 1, 2023

  1. defined type for NormalizedChunks

    @TomNicholas
    TomNicholas committed May 1, 2023
    Configuration menu
    Copy the full SHA
    76ce09e View commit details
    Browse the repository at this point in the history

  2. Merge branch 'cubed_integration' of https:/TomNicholas/xa… 

    …rray into cubed_integration
    @TomNicholas
    TomNicholas committed May 1, 2023
    Configuration menu
    Copy the full SHA
    127c184 View commit details
    Browse the repository at this point in the history

  3. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci
    pre-commit-ci[bot] committed May 1, 2023
    Configuration menu
    Copy the full SHA
    604bbf3 View commit details
    Browse the repository at this point in the history

  4. standardized capitalization of ChunkManagerEntrypoint

    @TomNicholas
    TomNicholas committed May 1, 2023
    Configuration menu
    Copy the full SHA
    7604594 View commit details
    Browse the repository at this point in the history

  5. Merge branch 'cubed_integration' of https:/TomNicholas/xa… 

    …rray into cubed_integration
    @TomNicholas
    TomNicholas committed May 1, 2023
    Configuration menu
    Copy the full SHA
    97537dd View commit details
    Browse the repository at this point in the history

  6. Merge branch 'main' into cubed_integration

    @TomNicholas
    TomNicholas committed May 1, 2023
    Configuration menu
    Copy the full SHA
    026fe17 View commit details
    Browse the repository at this point in the history

  7. ensure ruff doesn't remove import

    @TomNicholas
    TomNicholas committed May 1, 2023
    Configuration menu
    Copy the full SHA
    355555f View commit details
    Browse the repository at this point in the history

Commits on May 2, 2023

  1. ignore remaining typing errors stemming from unclear dask typing for … 

    …chunks arguments
    @TomNicholas
    TomNicholas committed May 2, 2023
    Configuration menu
    Copy the full SHA
    6eac87a View commit details
    Browse the repository at this point in the history

  2. Merge branch 'main' into cubed_integration

    @TomNicholas
    TomNicholas committed May 2, 2023
    Configuration menu
    Copy the full SHA
    f4224f6 View commit details
    Browse the repository at this point in the history

  3. rename store_kwargs->chunkmanager_store_kwargs

    @TomNicholas
    TomNicholas committed May 2, 2023
    Configuration menu
    Copy the full SHA
    4ec8370 View commit details
    Browse the repository at this point in the history

  4. missed return value

    @TomNicholas
    TomNicholas committed May 2, 2023
    Configuration menu
    Copy the full SHA
    316c63d View commit details
    Browse the repository at this point in the history

Commits on May 4, 2023

  1. array API fixes for astype

    @TomNicholas
    TomNicholas committed May 4, 2023
    Configuration menu
    Copy the full SHA
    9cd9078 View commit details
    Browse the repository at this point in the history

  2. Revert "array API fixes for astype" 

    This reverts commit 9cd9078.
    @TomNicholas
    TomNicholas committed May 4, 2023
    Configuration menu
    Copy the full SHA
    5dc2016 View commit details
    Browse the repository at this point in the history

Commits on May 10, 2023

  1. Merge branch 'main' into cubed_integration

    @dcherian
    dcherian authored May 10, 2023
    Configuration menu
    Copy the full SHA
    995eb5a View commit details
    Browse the repository at this point in the history

Commits on May 12, 2023

  1. Apply suggestions from code review

    @Illviljan
    Illviljan authored May 12, 2023
    Configuration menu
    Copy the full SHA
    c8b9ee7 View commit details
    Browse the repository at this point in the history

  2. Update xarray/tests/test_parallelcompat.py

    @Illviljan
    Illviljan authored May 12, 2023
    Configuration menu
    Copy the full SHA
    5c95758 View commit details
    Browse the repository at this point in the history

  3. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci
    pre-commit-ci[bot] committed May 12, 2023
    Configuration menu
    Copy the full SHA
    a61a30a View commit details
    Browse the repository at this point in the history

  4. overridden -> subclassed 

    Co-authored-by: Justus Magin <[email protected]>
    @TomNicholas @keewis
    TomNicholas and keewis authored May 12, 2023
    Configuration menu
    Copy the full SHA
    ea35a32 View commit details
    Browse the repository at this point in the history

  5. from_array_kwargs is optional 

    Co-authored-by: Justus Magin <[email protected]>
    @TomNicholas @keewis
    TomNicholas and keewis authored May 12, 2023
    Configuration menu
    Copy the full SHA
    e68b327 View commit details
    Browse the repository at this point in the history

  6. ensured all compute calls go through chunkmanager

    @TomNicholas
    TomNicholas committed May 12, 2023
    Configuration menu
    Copy the full SHA
    956c055 View commit details
    Browse the repository at this point in the history

  7. Merge branch 'cubed_integration' of https:/TomNicholas/xa… 

    …rray into cubed_integration
    @TomNicholas
    TomNicholas committed May 12, 2023
    Configuration menu
    Copy the full SHA
    42ad08e View commit details
    Browse the repository at this point in the history

  8. Raise if multiple chunkmanagers recognize array type 

    Co-authored-by: Justus Magin <[email protected]>
    @TomNicholas @keewis
    TomNicholas and keewis authored May 12, 2023
    Configuration menu
    Copy the full SHA
    cf0c28e View commit details
    Browse the repository at this point in the history

Commits on May 13, 2023

  1. from_array_kwargs is optional 

    Co-authored-by: Justus Magin <[email protected]>
    @TomNicholas @keewis
    TomNicholas and keewis authored May 13, 2023
    Configuration menu
    Copy the full SHA
    4f2ec27 View commit details
    Browse the repository at this point in the history

  2. from_array_kwargs is optional 

    Co-authored-by: Justus Magin <[email protected]>
    @TomNicholas @keewis
    TomNicholas and keewis authored May 13, 2023
    Configuration menu
    Copy the full SHA
    5f2f569 View commit details
    Browse the repository at this point in the history

  3. from_array_kwargs is optional 

    Co-authored-by: Justus Magin <[email protected]>
    @TomNicholas @keewis
    TomNicholas and keewis authored May 13, 2023
    Configuration menu
    Copy the full SHA
    929db33 View commit details
    Browse the repository at this point in the history

  4. from_array_kwargs is optional 

    Co-authored-by: Justus Magin <[email protected]>
    @TomNicholas @keewis
    TomNicholas and keewis authored May 13, 2023
    Configuration menu
    Copy the full SHA
    876f81c View commit details
    Browse the repository at this point in the history

  5. from_array_kwargs is optional 

    Co-authored-by: Justus Magin <[email protected]>
    @TomNicholas @keewis
    TomNicholas and keewis authored May 13, 2023
    Configuration menu
    Copy the full SHA
    ad0a706 View commit details
    Browse the repository at this point in the history

  6. fixes for chunk methods

    @TomNicholas
    TomNicholas committed May 13, 2023
    Configuration menu
    Copy the full SHA
    115b52b View commit details
    Browse the repository at this point in the history

  7. Merge branch 'main' into cubed_integration

    @TomNicholas
    TomNicholas committed May 13, 2023
    Configuration menu
    Copy the full SHA
    8741eec View commit details
    Browse the repository at this point in the history

  8. Merge branch 'cubed_integration' of https:/TomNicholas/xa… 

    …rray into cubed_integration
    @TomNicholas
    TomNicholas committed May 13, 2023
    Configuration menu
    Copy the full SHA
    a1ba4f0 View commit details
    Browse the repository at this point in the history

  9. correct readme to reflect fact we aren't vendoring dask in this PR an… 

    …y more
    @TomNicholas
    TomNicholas committed May 13, 2023
    Configuration menu
    Copy the full SHA
    bdf7600 View commit details
    Browse the repository at this point in the history

  10. update whatsnew

    @TomNicholas
    TomNicholas committed May 13, 2023
    Configuration menu
    Copy the full SHA
    06bb508 View commit details
    Browse the repository at this point in the history

  11. more docstring corrections

    @TomNicholas
    TomNicholas committed May 13, 2023
    Configuration menu
    Copy the full SHA
    ba00558 View commit details
    Browse the repository at this point in the history

  12. remove comment

    @TomNicholas
    TomNicholas committed May 13, 2023
    Configuration menu
    Copy the full SHA
    6a99454 View commit details
    Browse the repository at this point in the history

Commits on May 16, 2023

  1. Raise NotImplementedErrors in all abstract methods 

    Co-authored-by: Illviljan <[email protected]>
    @TomNicholas @Illviljan
    TomNicholas and Illviljan authored May 16, 2023
    Configuration menu
    Copy the full SHA
    95d81e8 View commit details
    Browse the repository at this point in the history

  2. type hints for every arg in ChunkManagerEntryPOint methods

    @TomNicholas
    TomNicholas committed May 16, 2023
    Configuration menu
    Copy the full SHA
    e5e3096 View commit details
    Browse the repository at this point in the history

  3. more explicit typing + fixes for mypy errors revealed

    @TomNicholas
    TomNicholas committed May 16, 2023
    Configuration menu
    Copy the full SHA
    a221436 View commit details
    Browse the repository at this point in the history

  4. Keyword-only arguments in full_like etc. 

    Co-authored-by: Illviljan <[email protected]>
    @TomNicholas @Illviljan
    TomNicholas and Illviljan authored May 16, 2023
    Configuration menu
    Copy the full SHA
    fe2e9b3 View commit details
    Browse the repository at this point in the history

  5. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci
    pre-commit-ci[bot] committed May 16, 2023
    Configuration menu
    Copy the full SHA
    7bcaece View commit details
    Browse the repository at this point in the history

  6. None as default instead of {}

    @TomNicholas
    TomNicholas committed May 16, 2023
    Configuration menu
    Copy the full SHA
    fecf7ed View commit details
    Browse the repository at this point in the history

  7. Merge branch 'cubed_integration' of https:/TomNicholas/xa… 

    …rray into cubed_integration
    @TomNicholas
    TomNicholas committed May 16, 2023
    Configuration menu
    Copy the full SHA
    15dc44b View commit details
    Browse the repository at this point in the history

  8. fix bug apparently introduced by changing default type of drop_axis k… 

    …warg to map_blocks
    @TomNicholas
    TomNicholas committed May 16, 2023
    Configuration menu
    Copy the full SHA
    660ef41 View commit details
    Browse the repository at this point in the history

  9. Removed hopefully-unnecessary mypy ignore 

    Co-authored-by: Illviljan <[email protected]>
    @TomNicholas @Illviljan
    TomNicholas and Illviljan authored May 16, 2023
    Configuration menu
    Copy the full SHA
    e6d6f1f View commit details
    Browse the repository at this point in the history

  10. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci
    pre-commit-ci[bot] committed May 16, 2023
    Configuration menu
    Copy the full SHA
    c7fbe79 View commit details
    Browse the repository at this point in the history

  11. removed unnecessary mypy ignores

    @TomNicholas
    TomNicholas committed May 16, 2023
    Configuration menu
    Copy the full SHA
    d728427 View commit details
    Browse the repository at this point in the history

  12. Merge branch 'cubed_integration' of https:/TomNicholas/xa… 

    …rray into cubed_integration
    @TomNicholas
    TomNicholas committed May 16, 2023
    Configuration menu
    Copy the full SHA
    6b9fa3f View commit details
    Browse the repository at this point in the history

Commits on May 18, 2023

  1. change default value of drop_axis kwarg in map_blocks and catch when … 

    …dask version < 2022.9.1
    @TomNicholas
    TomNicholas committed May 18, 2023
    Configuration menu
    Copy the full SHA
    51db5f2 View commit details
    Browse the repository at this point in the history

  2. fix checking of dask version in map_blocks

    @TomNicholas
    TomNicholas committed May 18, 2023
    Configuration menu
    Copy the full SHA
    c69c563 View commit details
    Browse the repository at this point in the history