pkgcheck results - main

[github-actions]

Checks for climaemet (v1.1.1.9000)

git hash: 17c0eca0

• ✔️ Package is already on CRAN.
• ✔️ has a 'codemeta.json' file.
• ✔️ has a 'contributing' file.
• ✔️ uses 'roxygen2'.
• ✔️ 'DESCRIPTION' has a URL field.
• ✔️ 'DESCRIPTION' has a BugReports field.
• ✔️ Package has at least one HTML vignette
• ✔️ All functions have examples.
• ✔️ Package has continuous integration checks.
• ✖️ Package coverage is 0% (should be at least 75%).
• ✔️ R CMD check found no errors.
• ✔️ R CMD check found no warnings.

Important: All failing checks above must be addressed prior to proceeding

Package License: GPL-3

---

1. Package Dependencies

Details of Package Dependency Usage (click to open)

The table below tallies all function calls to all packages ('ncalls'), both internal (r-base + recommended, along with the package itself), and external (imported and suggested packages). 'NA' values indicate packages to which no identified calls to R functions could be found. Note that these results are generated by an automated code-tagging system which may not be entirely accurate.

type	package	ncalls
internal	base	264
internal	climaemet	63
internal	utils	34
internal	stats	31
internal	graphics	6
internal	methods	6
internal	grDevices	3
internal	MASS	1
imports	ggplot2	53
imports	dplyr	30
imports	httr	26
imports	tidyr	9
imports	tibble	5
imports	jsonlite	3
imports	rappdirs	2
imports	readr	1
imports	rlang	NA
suggests	sf	2
suggests	jpeg	1
suggests	climatol	NA
suggests	gganimate	NA
suggests	knitr	NA
suggests	lubridate	NA
suggests	rmarkdown	NA
suggests	scales	NA
linking_to	NA	NA

Click below for tallies of functions used in each package. Locations of each call within this package may be generated locally by running 's <- pkgstats::pkgstats(<path/to/repo>)', and examining the 'external_calls' table.

base

c (27), names (25), paste0 (17), for (12), length (10), by (8), seq_len (8), file.path (6), grepl (6), lapply (6), min (6), paste (6), single (6), as.integer (5), as.numeric (5), data.frame (5), seq (5), col (4), date (4), max (4), tempdir (4), vapply (4), as.character (3), as.data.frame (3), as.Date (3), is.na (3), labels (3), round (3), substr (3), sum (3), Sys.getenv (3), dir (2), format (2), ifelse (2), levels (2), mean (2), ncol (2), pi (2), prettyNum (2), readRDS (2), rep (2), rev (2), Sys.Date (2), try (2), tryCatch (2), character (1), cut (1), drop (1), file (1), findInterval (1), floor (1), gsub (1), intersect (1), is.data.frame (1), is.list (1), is.null (1), logical (1), nrow (1), numeric (1), plot (1), readLines (1), scale (1), setdiff (1), sort (1), sub (1), switch (1), system.file (1), t (1), table (1), unique (1), units (1)

climaemet

aemet_stations (12), get_col_first_class (5), aemet_daily_clim (4), aemet_monthly_period (4), get_data_aemet (4), aemet_detect_api_key (3), aemet_normal_clim (3), aemet_daily_period (2), aemet_monthly_clim (2), get_metadata_aemet (2), getlines (2), aemet_api_key (1), aemet_daily_period_all (1), aemet_extremes_clim (1), aemet_forecast_daily (1), aemet_forecast_daily_single (1), aemet_forecast_hourly (1), aemet_forecast_hourly_single (1), aemet_forecast_tidy (1), aemet_forecast_vars_available (1), aemet_hlp_guess (1), aemet_hlp_meta_forecast (1), aemet_hlp_sf (1), aemet_hlp_tidy_forc_daily (1), aemet_hlp_tidy_forc_hourly (1), aemet_last_obs (1), aemet_monthly_period_all (1), aemet_normal_clim_all (1), first_day_of_year (1), getpolymax (1), unnest_all (1)

ggplot2

element_text (13), element_blank (8), ggplot (6), aes (5), unit (3), geom_hline (2), guide_colorbar (2), guides (2), scale_fill_manual (2), theme_minimal (2), coord_polar (1), element_rect (1), facet_wrap (1), geom_bar (1), geom_tile (1), labs (1), scale_fill_gradientn (1), theme (1)

utils

data (31), head (2), tail (1)

stats

end (12), start (6), var (5), df (4), approx (1), formula (1), line (1), poly (1)

dplyr

all_of (8), left_join (6), bind_rows (5), mutate (4), bind_cols (3), rename (2), full_join (1), last_col (1)

httr

content (8), GET (6), add_headers (4), headers (4), status_code (4)

tidyr

pivot_wider (6), unnest (2), drop_na (1)

graphics

title (6)

methods

as (6)

tibble

tibble (4), as_tibble (1)

grDevices

hcl.colors (2), colors (1)

jsonlite

fromJSON (3)

rappdirs

user_cache_dir (2)

sf

st_as_sf (1), st_crs (1)

jpeg

readJPEG (1)

MASS

expand (1)

readr

locale (1)

NOTE: Some imported packages appear to have no associated function calls; please ensure with author that these 'Imports' are listed appropriately.

---

2. Statistical Properties

This package features some noteworthy statistical properties which may need to be clarified by a handling editor prior to progressing.

Details of statistical properties (click to open)

The package has:

• code in R (100% in 19 files) and
• 3 authors
• 6 vignettes
• 4 internal data files
• 9 imported packages
• 31 exported functions (median 30 lines of code)
• 53 non-exported functions in R (median 36 lines of code)

---

Statistical properties of package structure as distributional percentiles in relation to all current CRAN packages
The following terminology is used:

• loc = "Lines of Code"
• fn = "function"
• exp/not_exp = exported / not exported

All parameters are explained as tooltips in the locally-rendered HTML version of this report generated by the checks_to_markdown() function

The final measure (fn_call_network_size) is the total number of calls between functions (in R), or more abstract relationships between code objects in other languages. Values are flagged as "noteworthy" when they lie in the upper or lower 5th percentile.

measure	value	percentile	noteworthy
files_R	19	79.7
files_vignettes	7	98.5
files_tests	0	0.0	TRUE
loc_R	2268	86.5
loc_vignettes	1310	94.0
num_vignettes	6	98.7	TRUE
data_size_total	69822	81.4
data_size_median	7367	77.1
n_fns_r	84	71.8
n_fns_r_exported	31	79.2
n_fns_r_not_exported	53	69.2
n_fns_per_file_r	3	45.6
num_params_per_fn	4	67.3
loc_per_fn_r	34	81.2
loc_per_fn_r_exp	30	63.0
loc_per_fn_r_not_exp	36	83.5
rel_whitespace_R	22	88.7
rel_whitespace_vignettes	28	94.4
doclines_per_fn_exp	53	66.3
doclines_per_fn_not_exp	0	0.0	TRUE
fn_call_network_size	89	77.3

---

2a. Network visualisation

An interactive visualisation of calls between objects in the package has been uploaded as a workflow artefact. To view it, click on results from the latest 'pkgcheck' action, scroll to the bottom, and click on the 'visual-network' artefact.

---

3. goodpractice and other checks

Details of goodpractice checks (click to open)

3a. Continuous Integration Badges

GitHub Workflow Results

id	name	conclusion	sha	run_number	date
5762075410	CRAN Status Monitor	success	2a159f	89	2023-08-04
5763740501	lintr	success	bbfff0	5	2023-08-04
5762900860	pages build and deployment	success	5ccc36	165	2023-08-04
5763635996	pkgcheck	NA	17c0ec	1	2023-08-04
5763740504	R-CMD-check	success	bbfff0	333	2023-08-04
5763740496	R-CMD-check-examples	NA	bbfff0	415	2023-08-04
5762777159	rostemplate-gh-pages	success	17c0ec	264	2023-08-04
5750148454	update-docs	success	30751b	60	2023-08-03

---

3b. goodpractice results

R CMD check with rcmdcheck

R CMD check generated the following note:

1. checking data for non-ASCII characters ... NOTE
   Note: found 8737 marked UTF-8 strings

R CMD check generated the following check_fail:

1. rcmdcheck_non_ascii_characters_in_data

Test coverage with covr

Package coverage: 0

The following files are not completely covered by tests:

file	coverage
R/aemet_api_key.R	0%
R/aemet_api_query.R	0%
R/aemet_daily.R	0%
R/aemet_extremes.R	0%
R/aemet_forecast_daily.R	0%
R/aemet_forecast_hourly.R	0%
R/aemet_forecast_utils.R	0%
R/aemet_last_obs.R	0%
R/aemet_monthly.R	0%
R/aemet_normal.R	0%
R/aemet_stations.R	0%
R/climaemet_news.R	0%
R/climatogram.R	0%
R/helpers.R	0%
R/stripes.R	0%
R/utils.R	0%
R/windrose.R	0%

Cyclocomplexity with cyclocomp

The following functions have cyclocomplexity >= 15:

function	cyclocomplexity
ggclimat_walter_lieth	40
ggwindrose	39
aemet_daily_clim	23
get_data_aemet	23
get_metadata_aemet	23
ggstripes	16

Static code analyses with lintr

lintr found no issues with this package!

---

Package Versions

package	version
pkgstats	0.1.3.4
pkgcheck	0.1.2.1