Data presented in the paper are generated with Optocoder v0.1.1. Figures metadata can be found below.
| Description | Used Pucks | FLAG | ||
|---|---|---|---|---|
| Fig. 1 | Optocoder pipeline. | Sketch. Microscopy images are from P4. | NA | |
| Fig. 2 | Crosstalk correction | a) Sketch. b) Data from P4. | PLOT_CROSSTALK | |
| Fig. 3 | Phasing/prephasing | Sketch. No data is used. | NA | |
| Fig. 4 | Machine learning pipeline | Sketch. No data is used. | NA | |
| Fig. 5 | Matching results. | P1, P2, P3, P4. | PLOT_MATCHES | |
| Fig. 6 | Matching results (Slide-Seq) | SSP1, SSP2, SSP3, SSP4. | PLOT_MATCHES | |
| Sup. Fig. 1 | QC Plots | P4 | Optocoder | |
| Sup. Fig. 2 | QC Plots | P4 | Optocoder | |
| Sup. Fig. 3 | Image processing | P4 | Optocoder | |
| Sup. Fig. 4 | Phasing heatmap | P1, P2, P3, P4 | PLOT_PHASING_SEARCH | |
| Sup. Fig. 5 | Phasing heatmap | SSP1, SSP2, SSP3, SSP4 | PLOT_PHASING_SEARCH | |
| Sup. Fig. 6 | ML Comparisons | a) P1, P2, P3, P4 b) SSP1, SSP2, SSP3, SSP4 | PLOT_ML_COMPARISON | |
| Sup. Fig. 7 | ML Specificity Analysis | a) P1, P2, P3, P4 b) SSP1, SSP2, SSP3, SSP4 | PLOT_ML_SPECIFICITY_ANALYSIS | |
| Sup. Fig. 8 | Top Barcodes Analysis | a) P1, P2, P3, P4 b) SSP1, SSP2, SSP3, SSP4 | PLOT_TOP_BARCODES_ANALYSIS | |
| Sup. Fig. 9 | Chastity Score Analysis | a) P1, P2, P3, P4 b) SSP1, SSP2, SSP3, SSP4 | PLOT_CHASTITY_ANALYSIS | |
| Sup. Fig. 10 | Prediction Score Analysis | a) P1, P2, P3, P4 b) SSP1, SSP2, SSP3, SSP4 | PLOT_CHASTITY_ANALYSIS |