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SARS-CoV-2 Variant Metadata in Parquet format

This repository contains the SARS-CoV-2 variant metadata in the Parquet compressed format in the data directory:

  • data/variants.parquet

The download_variants.ipynb notebook downloads SARS-CoV-2 variant metadata from China National Center for Bioinformation, standardizes the column names and data, and saves the results as a .parquet file.

The read_variants.ipynb notebook shows an example how to read selected columns from the .parquet file into a Pandas dataframe.

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