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Sliding window across spatial neighbourhood #829
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Hi Francesca, If all you need is a labeling function and not anything fancier I think I can help. I'm a bioinformatics analyst at the KF Cancer Center in Boston - I've done this before in R for a lung cancer analysis. Wrote up new code that does what you ask and takes in an AnnData object. I haven't tested it that thoroughly so keep that in mind. Two pictures below after running
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@richierip thanks for starting this, I will check it out! To continue the brain storm, some additional implementation features that need to be considered:
Getter functions:
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hi @FrancescaDr and @richierip would you consider submit a PR for such analysis? |
@giovp I can make one next week |
Description
Implementation of sliding window (inspired by Kasumi) over a spatial neighbourhood or view.
Input:
Output:
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