tweak: replace instances of nf-validation plugin

seqeralabs · Jul 1, 2024 · 4bbf704 · 4bbf704
1 parent 51c3153
commit 4bbf704
Show file tree

Hide file tree

Showing 3 changed files with 5 additions and 5 deletions.
diff --git a/main.nf b/main.nf
@@ -28,7 +28,7 @@ params.fasta = WorkflowMain.getGenomeAttribute(params, 'fasta')
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 */
 
-include { validateParameters; paramsHelp } from 'plugin/nf-validation'
+include { validateParameters; paramsHelp } from 'plugin/nf-schema'
 
 // Print help message if needed
 if (params.help) {

diff --git a/nextflow.config b/nextflow.config
@@ -185,7 +185,7 @@ singularity.registry = 'quay.io'
 
 // Nextflow plugins
 plugins {
- id 'nf-validation' // Validation of pipeline parameters and creation of an input channel from a sample sheet
+ id 'nf-schema' // Validation of pipeline parameters and creation of an input channel from a sample sheet
 }
 
 // Load igenomes.config if required

diff --git a/workflows/test.nf b/workflows/test.nf
@@ -4,7 +4,7 @@
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 */
 
-include { paramsSummaryLog; paramsSummaryMap } from 'plugin/nf-validation'
+include { paramsSummaryLog; paramsSummaryMap } from 'plugin/nf-schema'
 
 def logo = NfcoreTemplate.logo(workflow, params.monochrome_logs)
 def citation = '\n' + WorkflowMain.citation(workflow) + '\n'
@@ -70,8 +70,8 @@ workflow TEST {
  file(params.input)
  )
  ch_versions = ch_versions.mix(INPUT_CHECK.out.versions)
- // TODO: OPTIONAL, you can use nf-validation plugin to create an input channel from the samplesheet with Channel.fromSamplesheet("input")
- // See the documentation https://nextflow-io.github.io/nf-validation/samplesheets/fromSamplesheet/
+ // TODO: OPTIONAL, you can use nf-schema plugin to create an input channel from the samplesheet with Channel.fromSamplesheet("input")
+ // See the documentation https://nextflow-io.github.io/nf-schema/samplesheets/fromSamplesheet/
  // ! There is currently no tooling to help you write a sample sheet schema
 
  //