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@settylab

Setty Lab @ Fred Hutch

We are a multi-disciplinary research group investigation differentiation trajectories using single-cell data

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  1. Mellon Mellon Public

    Non-parametric density inference for single-cell analysis.

    Jupyter Notebook 62 3

  2. atac_metacell_utilities atac_metacell_utilities Public

    Snakemake pipeline for scATAC metacell utilities such as primed and lineage specific scores, chromVAR, in-silico ChIP

    Python 4

  3. 2for1separator 2for1separator Public

    Deconvolve CUT&Tag 2for1 data.

    Python 1

  4. Harmony Harmony Public

    Forked from dpeerlab/Harmony

    Harmony framework for connecting scRNA-seq data from discrete time points

    Jupyter Notebook

  5. Palantir Palantir Public

    Forked from dpeerlab/Palantir

    Single cell trajectory detection

    Jupyter Notebook

  6. SEACells SEACells Public

    Forked from dpeerlab/SEACells

    SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data

    Jupyter Notebook

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