Remove difference between visually checked and modified

manual_correction.py

@@ -483,27 +483,11 @@ def get_modification_time(fname):
  return datetime.datetime.fromtimestamp(os.path.getmtime(fname))
 
 
-def check_if_modified(time_one, time_two):
- """
- Check if the file was modified by the user. Return True if the file was modified, False otherwise.
- :param time_one: modification time of the file before viewing
- :param time_two: modification time of the file after viewing
- :return:
- """
- if time_one != time_two:
- print("The label file was modified.")
- return True
- else:
- print("The label file was not modified.")
- return False
-
-
-def update_json(fname_nifti, name_rater, modified):
+def update_json(fname_nifti, name_rater):
  """
  Create/update JSON sidecar with meta information
  :param fname_nifti: str: File name of the nifti image to associate with the JSON sidecar
  :param name_rater: str: Name of the expert rater
- :param modified: bool: True if the file was modified by the user
  :return:
  """
  fname_json = fname_nifti.replace('.gz', '').replace('.nii', '.json')
@@ -523,16 +507,10 @@ def update_json(fname_nifti, name_rater, modified):
  json_dict = {'SpatialReference': 'orig',
  'GeneratedBy': []}
 
- # If the label was modified, add "Name": "Manual" to the JSON sidecar
- if modified:
- json_dict['GeneratedBy'].append({'Name': 'Manual',
- 'Author': name_rater,
- 'Date': time.strftime('%Y-%m-%d %H:%M:%S')})
- # If the was not modified, add "Name": ""Visually verified"" to the JSON sidecar
- else:
- json_dict['GeneratedBy'].append({'Name': 'Visually verified',
- 'Author': name_rater,
- 'Date': time.strftime('%Y-%m-%d %H:%M:%S')})
+ # If the label was modified or just checked, add "Name": "Manual" to the JSON sidecar
+ json_dict['GeneratedBy'].append({'Name': 'Manual',
+ 'Author': name_rater,
+ 'Date': time.strftime('%Y-%m-%d %H:%M:%S')})
 
  # Write the data to the JSON file
  with open(fname_json, 'w') as outfile: # w to overwrite the file
@@ -895,11 +873,10 @@ def main():
  if args.add_seg_only:
  # We are passing modified=True because we are adding a new segmentation and we want
  # to create a JSON file
- update_json(fname_out, name_rater, modified=True)
+ update_json(fname_out, name_rater)
  # Generate QC report
  else:
- modified = check_if_modified(time_one, time_two)
- update_json(fname_out, name_rater, modified)
+ update_json(fname_out, name_rater)
  # Generate QC report
  generate_qc(fname, fname_out, task, fname_qc, subject, args.config, args.qc_lesion_plane, suffix_dict)