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Labels with missing suffixes #151

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NathanMolinier opened this issue Nov 1, 2023 · 3 comments · Fixed by #159
Closed

Labels with missing suffixes #151

NathanMolinier opened this issue Nov 1, 2023 · 3 comments · Fixed by #159
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@NathanMolinier
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NathanMolinier commented Nov 1, 2023 •
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Description

I noticed that for some subjects masks, suffixes are missing:

  • derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_T1w.nii.gz
  • derivatives/labels_softseg/sub-barcelona02/anat/sub-barcelona02_flip-1_mt-on_MTS.nii.gz
  • derivatives/labels_softseg/sub-barcelona02/anat/sub-barcelona02_T2w.nii.gz
  • derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_MTS.nii.gz

@sandrinebedard should we just add _softseg ?
@NathanMolinier NathanMolinier added the bug Something isn't working label Nov 1, 2023
@sandrinebedard
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yes!

@NathanMolinier
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NathanMolinier commented Nov 10, 2023 •
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@sandrinebedard it seems that the problem is different actually. The two files with and without the suffix _softseg are present in the derivatives folders and they both represent soft segmentations of the spinal cord with different soft values. What should I do with these files ?

tagging @valosekj if you have any suggestions

@sandrinebedard
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I would keep the softseg one!

@sandrinebedard sandrinebedard mentioned this issue Feb 20, 2024
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Refractor derivatives naming convention spine-generic/data-multi-subject
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@NathanMolinier @sandrinebedard