Re upload preprocessed data after fresh preprocessing #161
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sandrinebedard
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I just checked all contrasts for 3 subjects and everything seems to be good! The orientations for all images and Can be merged |
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@mguaypaq can I merge? or there is something specific to do with git annex? |
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Yes, you can merge from (Just to be thorough, I did check that |
mguaypaq
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Jun 27, 2024
* add preprocessed data * add labels_softseg_bin in derivatives * add space-other * change suffix * add disc labels for MTS, T2star and DWI * modify/add json file with space other * remove space-other for disc labels * add dwi json * reorient T2star * update code to create json * remove duplicates of softseg to adress issue 151 * change GM name * change C2 to C3 * fix wrong qform and sform * fix qform and sform * redo discs and fix orientation to seg * fix disc label * set sform as qform * Reorient to RPI seg of MTS data and cpy qform to sform * Re upload preprocessed data after fresh preprocessing (#161) * add updated labels softseg bin * add updated softseg labels * add preprocessed images * rm excluded participants * update with script and release tag * update readme with release of code
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Description
We noticed that in sb/156-add-preprocessed-images, the MTS
labels_softsegandlabels_softseg_bindata were in LPI and had some qform/sform problems. To fix this, I reran the processing pipeline from contrast-agnostic. From that processing, I reuploadedderivatives/data_preprocessed,derivatives/labels_softsegandlabels_softseg_bin