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requirements.txt
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requirements.txt
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anndata==0.9.1
h5py==3.9.0
igraph==0.10.5
lightning-bolts==0.7.0
lightning-utilities==0.9.0
Markdown==3.4.3
matplotlib==3.7.2
networkx==3.1
numba==0.57.1
numcodecs==0.11.0
numpy==1.23.4
oauthlib==3.2.2
omnipath==1.0.7
packaging==23.1
pandas==2.0.3
Pillow==10.0.0
pyarrow==12.0.1
pytest==7.4.0
pytorch-lightning==1.9.5
PyYAML==6.0
requests==2.31.0
requests-oauthlib==1.3.1
rich==13.4.2
scanpy==1.9.3
scikit-image==0.20.0
scikit-learn==1.3.0
scipy==1.11.1
seaborn==0.12.2
shapely==2.0.1
spatial_image==0.3.0
spatialdata==0.0.12
squidpy==1.3.0
statsmodels==0.14.0
torch==2.0.1
torch-geometric==2.3.1
torch-scatter==2.1.1
torch-sparse==0.6.17
torchmetrics==1.0.0
torchvision==0.15.2
tqdm==4.65.0
typing_extensions==4.5.0
umap-learn==0.5.3
urllib3==1.26.16