Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add quantum chemistry applications #277

Closed
wants to merge 10 commits into from
Closed

Conversation

jsperhac
Copy link
Contributor

Description

Added three quantum chemistry related applications to applications.json. These applications are installed on the cluster at CCR and will be used by the SEAGrid gateway:

  • NEXMD
  • Libra
  • DFTB+

Motivation and Context

Improve application identification; improve job metadata capture

Tests performed

Verified that json is valid

Types of changes

  • Bug fix (non-breaking change which fixes an issue)
  • New feature (non-breaking change which adds functionality)
  • Breaking change (fix or feature that would cause existing functionality to change)

Checklist:

  • My code follows the code style of this project as found in the CONTRIBUTING document.
  • I have added tests to cover my changes.
  • All new and existing tests passed.

"license_type": "permissive",
"science_area": "Molecular Dynamics",
"url": "https:/lanl/NEXMD",
"hints": [
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

The use of hints is deprecated - this exists for backwards compatibility. Prefer to use the more precise execmatch to match the executable name with a regex or pathmatch to match the full path string (again with a regex).

@jpwhite4
Copy link
Member

The json is invalid - hence the CI build fails:

SyntaxError: Unexpected token ] in JSON at position 52571

@jpwhite4 jpwhite4 added this to the 10.0.0 milestone Aug 18, 2021
@jsperhac
Copy link
Contributor Author

Looks like this is failing in the upgrade case because the table modw_supremm.application has the old number of applications (227) whereas with the additions in this PR it would contain 231. The new install passes.

So I need to make a change to an update script, is that correct? Where might I find that? Thanks!

@jpwhite4 jpwhite4 changed the base branch from xdmod9.5 to xdmod10.0 January 6, 2022 17:15
@jpwhite4
Copy link
Member

The binary for NEXMD is nexmd.exe rather than nexmd the mapping needs to be updated to reflect this.

@jtpalmer jtpalmer modified the milestones: 10.0.0, 10.5.0 Mar 14, 2022
@jtpalmer jtpalmer changed the base branch from xdmod10.0 to xdmod10.5 May 25, 2022 12:31
@jpwhite4 jpwhite4 modified the milestones: 10.5.0, 11.0.0 Nov 16, 2023
@jpwhite4
Copy link
Member

superceded by #376

@jpwhite4 jpwhite4 closed this Jun 20, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

3 participants