Try Tomcat 9 #17
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| --- | |
| # yamllint disable rule:line-length | |
| name: CamCHILDMine | |
| # yamllint disable-line rule:truthy | |
| on: | |
| push: | |
| paths: | |
| - '.env' | |
| - '.github/workflows/camchildmine.yml' | |
| - 'intermine_builder/**' | |
| - 'local.docker-compose.yml' | |
| - 'mkdatadirs.sh' | |
| - 'postgres/**' | |
| - 'solr/**' | |
| - 'tomcat/**' | |
| jobs: | |
| camchildmine: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install prerequisites | |
| run: | | |
| set -eux -o pipefail | |
| sudo apt -y install wait-for-it | |
| - name: Make data dirs | |
| run: | | |
| set -eux -o pipefail | |
| ./mkdatadirs.sh | |
| - name: Clone camCHILDMine | |
| run: | | |
| set -eux -o pipefail | |
| cd ${GITHUB_WORKSPACE}/data/mine | |
| git clone https:/ucam-department-of-psychiatry/camCHILDMine | |
| cd camCHILDMine | |
| git checkout cadre-dev | |
| - name: Up | |
| run: | | |
| set -eux -o pipefail | |
| cd ${GITHUB_WORKSPACE} | |
| # Use run to trap any build errors early | |
| # DOCKER_UID=$(id -u) DOCKER_GID=$(id -g) MINE_NAME=camCHILDMine docker compose -f local.docker-compose.yml run --rm intermine_builder | |
| DOCKER_UID=$(id -u) DOCKER_GID=$(id -g) MINE_NAME=camCHILDMine docker compose -f local.docker-compose.yml up -d | |
| - name: Wait | |
| run: | | |
| set -eux -o pipefail | |
| cd ${GITHUB_WORKSPACE} | |
| # Wait for builder to finish and return exit code | |
| DOCKER_UID=$(id -u) DOCKER_GID=$(id -g) MINE_NAME=camCHILDMine docker compose -f local.docker-compose.yml wait intermine_builder | |
| # Wait 15 minutes | |
| wait-for-it localhost:9999 --timeout=900 | |
| - name: Check webapp | |
| run: | | |
| set -eux -o pipefail | |
| curl -I -L --retry 10 --fail --insecure "http://localhost:9999/camchildmine/" | |
| - name: Dump Docker logs | |
| if: failure() | |
| run: | | |
| set -eux -o pipefail | |
| cd ${GITHUB_WORKSPACE} | |
| sleep 120 | |
| DOCKER_UID=$(id -u) DOCKER_GID=$(id -g) docker compose -f local.docker-compose.yml logs intermine_builder | |
| DOCKER_UID=$(id -u) DOCKER_GID=$(id -g) docker compose -f local.docker-compose.yml logs postgres | |
| DOCKER_UID=$(id -u) DOCKER_GID=$(id -g) docker compose -f local.docker-compose.yml logs solr | |
| DOCKER_UID=$(id -u) DOCKER_GID=$(id -g) docker compose -f local.docker-compose.yml logs tomcat |