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Merge and cleanup Heatmap visualisation #35

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wants to merge 256 commits into from
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Merge and cleanup Heatmap visualisation #35

wants to merge 256 commits into from

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MaybeJustJames
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@MaybeJustJames MaybeJustJames commented Jun 30, 2020 •
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Closes #32

NOTE this branch should be merged after 2.0_node_data

@pverscha
Some documentation
0678c62
@pverscha
Width of squares is now dynamically calculated
d686f01
@pverscha
Titles of rows ans columns are also rendered right now
95c8994
@pverscha
Visualization implemented a bit more
14ec3db
@pverscha
Fixed exporting as jQuery function
93eaa60
@pverscha
Replaced text-nodes by foreign objects to be able to use ellipsis
2c60a8b
@pverscha
Implement functions for displaying and styling tooltip
3f28307
@pverscha
Basic tooltip is now working
9ce4a42
@pverscha
Generated random data for better debugging of heatmap
c8c923c
@pverscha
Start implementation of clustering for Heatmap
0bd4c28
@pverscha
A Tree is now constructed during clustering of the Heatmap
b12fceb
@pverscha
Clustering actually seems to work
4b7a614
@pverscha
Animations after clustering the heatmap
5b1553d
@pverscha
Column and row labels are now also animated
61b1673
@pverscha
Updated tooltips to be more comprehensive and choice for animation speed
62e2e1c
@pverscha
Restructured metrics class
d567169
@pverscha
Ava is initialized
2c02fad
@pverscha
Add tests for clustering
d4a90fb
@pverscha
More work on writing test cases
7c42dc2
@pverscha
Fix some problems with typings on Windows
1bfb8a5
@pverscha
Changed directory structure
c656cd0
@pverscha
Implemented MOLO heuristics for reordering dendrogram
569f75a
@pverscha
Minor changes
f50dbae
@pverscha
Start cleaning up code and overload of generics
9772773
@pverscha
Start fixing tests
2a8e304
@pverscha
Refactoring workt
a5dc61c
@pverscha
Fixed tests
2536c19
@pverscha
Newick Tree generator is working now
b91d097
@pverscha
Resturctured code
b0d0aae
@pverscha
Cleanup console.logs
9e313d6
@MaybeJustJames
DataFrame idxmax() and idxmin() now return a single max/min
03a6912
@MaybeJustJames
Add drop() function to Series
5de6127
@MaybeJustJames
Working UPGMA and distance matrix tests
894dd95
@MaybeJustJames
Clean up the UPGMA implementation
713a1a8
@MaybeJustJames
Add clustering documentation
a8988ad
@MaybeJustJames
Add more cluster tests for UPGMA clustering
b7e61b0
@MaybeJustJames
Implement and test the dendsort algorithm
c390dc1 
Based on R code from:
https://bitbucket.org/vda-lab/dendsort/src/master/R/sort_smallest.R
@MaybeJustJames
Remove files that are no longer used
aedf0dd
@MaybeJustJames
Add extendedDiagnostics to tsconfig
ef0e23c
@MaybeJustJames
Finalise necessary items for clustering implementation on Heatmap
86c6435
@MaybeJustJames
Likewise
f54a73d
@MaybeJustJames
Correct a typing siiue on typescript upgrade
3dc6a45
@MaybeJustJames
Add and fix tests
947f0b8
@MaybeJustJames
Clustering implementation
1027e81
@MaybeJustJames
Update dependencies and integrate eslint/prettier
d333eab
@MaybeJustJames
Lint and Prettier all code
8501d5a
@MaybeJustJames
Revert "Lint and Prettier all code"
cdab2b2 
This reverts commit 8501d5a.
@MaybeJustJames
Dependency and config changes
6a590ba
@MaybeJustJames
Working heatmap example
1a45e0a
@MaybeJustJames
Implement animated clustering
ade7a1d
@MaybeJustJames
Heatmap has full animations working and same data as v1 example
db89997
@MaybeJustJames MaybeJustJames changed the title [WORK IN PROGRESS] Merge and cleanup Heatmap visualisation Merge and cleanup Heatmap visualisation Jun 30, 2020
@pverscha pverscha mentioned this pull request Feb 16, 2021
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Parts of this PR have been integrated in #38. Thanks James for your work! :)

@pverscha pverscha closed this Feb 16, 2021
@bmesuere bmesuere deleted the 2.0_heatmap branch March 9, 2021 09:40
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@bmesuere bmesuere Awaiting requested review from bmesuere

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