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How to run pre-msa.bf #26
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Dear @nicolasalexandre21, The sequence above installs the Best, |
Ah this is perfect! Thank you!
…On Tue, Dec 6, 2022 at 3:54 PM Sergei Pond ***@***.***> wrote:
Dear @nicolasalexandre21 <https:/nicolasalexandre21>,
The sequence above installs the HyPhy program and standard libraries.
pre-msa is a part of standalone analyses (hyphy-analyses) that need to be
installed separately. I just realized that the README there did not include
this step.
I've updated it now: see
https:/veg/hyphy-analyses/blob/master/README.md
Best,
Sergei
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Best,
Nicolas Alexandre
PhD Candidate, Integrative Biology
Whiteman Lab
University of California - Berkeley
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Hi I installed hyphy-analyses per the instructions like so:
module load gcc openmpi
git clone https:/veg/hyphy.git hyphy-develop
cd hyphy-develop
git checkout develop
cmake -DZLIB_LIBRARY="/global/scratch/users/nalexandre/miniconda3/lib/libz.a" -DZLIB_INCLUDE_DIR="/global/scratch/users/nalexandre/miniconda3/lib/" ./
make -j MP
./HYPHYMP analysis-file --help
I am trying to figure out how to run pre-msa.bf, but I cannot find it in the directory following installation nor can I run the executable when I download it manually.
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