Archiving Predictions

Snakefile

@@ -34,6 +34,7 @@ rule all:
  input:
  f"{working_dir}/everwatch-workflow/App/Zooniverse/data/PredictedBirds.zip",
  f"{working_dir}/everwatch-workflow/App/Zooniverse/data/nest_detections_processed.zip",
+ f"{working_dir}/everwatch-workflow/App/Zooniverse/data/forecast_web_updated.txt",
  expand(f"{working_dir}/predictions/{{year}}/{{site}}/{{flight}}_projected.shp",
  zip, site=SITES, year=YEARS, flight=FLIGHTS),
  expand(f"{working_dir}/processed_nests/{{year}}/{{site}}/{{site}}_{{year}}_processed_nests.shp",
@@ -136,3 +137,14 @@ rule upload_mapbox:
  "everwatch"
  shell:
  "python upload_mapbox.py {input}"
+
+rule update_everwatch_predictions:
+ input:
+ f"{working_dir}/everwatch-workflow/App/Zooniverse/data/PredictedBirds.zip"
+ output:
+ touch(f"{working_dir}/everwatch-workflow/App/Zooniverse/data/forecast_web_updated.txt")
+ shell:
+ """
+ bash archive_predictions.sh
+ touch {output}
+ """

archive_predictions.sh

@@ -0,0 +1,57 @@
+#!/bin/bash
+
+# Capture the current date and time for the commit message
+date=$(date '+%Y-%m-%d %H:%M:%S')
+
+# Change directory to the everwatch-predictions
+cd /blue/ewhite/everglades/everwatch-predictions || exit
+
+# Stash any local changes, switch to the main branch, and pull the latest updates
+git stash
+git checkout main
+git pull origin main
+
+# Set up the user information for Weecology Deploy Bot
+git config user.email "[email protected]"
+git config user.name "Weecology Deploy Bot"
+
+# Check if the TEST_ENV environment variable is set, skip actual deployment if it is
+if [ -n "$TEST_ENV" ]; then
+ echo "TEST_ENV is set: $TEST_ENV"
+ git checkout -B dry-run
+ git reset --hard origin/main
+ echo "Test dry run: $date" >> README.md
+ git add -u
+ git commit -m "Weecology Deploy Bot: Dry run tests from HiperGator $date [ci skip]"
+ git push origin dry-run -f
+ exit 0
+fi
+
+# Copy the updated PredictedBirds.zip file to the repository
+cp /blue/ewhite/everglades/everwatch-workflow/App/Zooniverse/data/PredictedBirds.zip \
+ /blue/ewhite/everglades/everwatch-predictions/data/PredictedBirds.zip
+
+# Copy the updated PredictedBirds.csv file to the repository
+cp /blue/ewhite/everglades/everwatch-workflow/App/Zooniverse/data/PredictedBirds.csv \
+ /blue/ewhite/everglades/everwatch-predictions/data/PredictedBirds.csv
+
+# Stage the files, commit with a message including the current date, and push changes
+git add PredictedBirds.zip PredictedBirds.csv
+git commit -m "Weecology Deploy Bot $date"
+
+# Uncomment the following line if you intend to push directly to the main branch
+# git push origin main
+
+# Reapply stashed changes, if any
+git stash pop || echo "No stashed changes to apply."
+
+# Set up the deploy remote for the portal-forecasts repository
+git remote remove deploy
+git remote add deploy https://${GITHUB_TOKEN}@github.com/weecology/everwatch-predictions.git
+
+# Push the changes to the deploy remote's main branch
+git push --quiet deploy main
+
+# Uncomment the following lines if you want to tag the release and push tags
+# git tag $date
+# git push --quiet deploy --tags