Merge pull request #201 from zhanghao-njmu/develop

Fix some bugs
zhanghao-njmu · Nov 2, 2023 · e445153 · e445153
2 parents 049a7d0 + db7e6da
commit e445153
Showing 1 changed file with 4 additions and 2 deletions.
diff --git a/R/utils.R b/R/utils.R
@@ -558,13 +558,15 @@ check_Python <- function(packages, envname = NULL, conda = "auto", force = FALSE
 check_R <- function(packages, install_methods = c("BiocManager::install", "install.packages", "devtools::install_github"), lib = .libPaths()[1], force = FALSE) {
  status_list <- list()
  for (pkg in packages) {
+ version <- NULL
  if (grepl("/", pkg)) {
  # github package
  pkg_name <- strsplit(pkg, split = "/|@|==", perl = TRUE)[[1]][[2]]
- version <- NULL
  } else {
  pkg_name <- strsplit(pkg, split = "@|==", perl = TRUE)[[1]][[1]]
- version <- strsplit(pkg, split = "@|==", perl = TRUE)[[1]][[2]]
+ if (length(strsplit(pkg, split = "@|==", perl = TRUE)[[1]]) > 1) {
+ version <- strsplit(pkg, split = "@|==", perl = TRUE)[[1]][[2]]
+ }
  }
  if (is.null(version)) {
  force_update <- isTRUE(force)