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V2 CBP pipeline

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@scorreard scorreard released this 03 Aug 23:35
· 33 commits to V2 since this release
ce36f66

Major changes compared to release 1 include the use of GOAT API to query information such as genome size or ploidy from the specie taxon number (taxid).

Other changes include :

  • Faster pipeline with less duplicated modules
  • HiC map using Pretext instead of Juicer to perform manual curation
  • BUSCO using auto lineage when no lineage is defined (more automated pipeline)