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Releases: broadinstitute/picard

2.22.3

08 Apr 15:21
@sahakiann sahakiann
2.22.3
77fcbbb
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2.22.3
  • Fixes CheckIlluminaDirectory problem with cbcl files and skips in the READ_STRUCTURE (#1489)
  • Add arguments for inputs and output to the ConvertSequencingArtifactToOxoG command (#1492)
  • Fixes LiftoverVCF for indels (again) (#1469)
  • Only requiring that the input VCF be indexed if an INTERVAL is provided (#1487)
  • Allow more SD inputs to LiftoverIntervals and BedToIntervalList (#1446)
  • Improvements to CompareMetrics - Now gives fuller description of differences in metrics. - Added feature to ignore differences in certain metrics. - Added 'fuzzy' metric comparison. - Added ability to output a differences file.
Assets 4
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2.22.2

30 Mar 17:45
@sahakiann sahakiann
2.22.2
547bc77
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2.22.2
  • Fixed two problems in CompareGtcFiles (#1486)
Assets 4
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2.22.1

16 Mar 19:27
@sahakiann sahakiann
2.22.1
b3b8fcc
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2.22.1
  • Ported CompareGtcFiles from Picard private repo (#1468)
  • Update htsjdk (#1482)
Assets 4
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2.22.0

27 Feb 20:24
@sahakiann sahakiann
2.22.0
81bef8d
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2.22.0
  • Modify VcfToAdpc to handle multiple samples. (#1470)
  • Update htsjdk to 2.21.2 (#1471)
  • Fix non-symmetry bug in FingerprintChecker (#1455)
  • Cleaned up javadoc... (#1434)
  • Removed plain asserts and replaced them with ValidationUtil function (#1465)
  • Fixed a bug where the merging of fingerprints changes the original list of fingerprints leading to incorrect results in the self-lod case when using Crosscheck without SECOND_INPUT. (#1458)
  • Port CombineVcfs from picard private to picard (#1463)
Assets 4
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2.21.9

19 Feb 14:24
@sahakiann sahakiann
2.21.9
c5cd747
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2.21.9
  • Port CombineVcfs from picard private to picard (#1463)
Assets 4
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2.21.8

05 Feb 15:52
@sahakiann sahakiann
2.21.8
d7c01cc
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2.21.8
  • Remove pullapprove configuration and replace it with github branch protections. (#1450)
Assets 4
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2.21.7

21 Jan 16:30
@sahakiann sahakiann
2.21.7
32db306
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2.21.7
  • Corrected LiftOverIntervalList documentation (#1448)
Assets 4
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2.21.6

19 Dec 20:19
@nikellepetrillo nikellepetrillo
2.21.6
b20b4c8
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2.21.6
  • Re-add DecimalFormat, but get rid of comma (#1444)
Assets 4
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2.21.5

18 Dec 21:17
@gordonwade gordonwade
2.21.5
d7e09b8
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2.21.5
  • CreateVerifyIDIntensityContaminationMetricsFile handle negative LLK (#1440)
  • Parse Floats from GtcToVcf in VcfToAdpc (#1436)
  • Compile and test on 11 (#1410)
Assets 4
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2.21.4

26 Nov 14:28
@mreinema mreinema
2.21.4
b74ba5d
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2.21.4
  • CollectRnaSeqMetrics: Made IGNORE_SEQUENCE optional (#1423)
    • replaced int with long to avoid integer overflow in large files. (#1427)
  • only adding a period if there's not already a period is pathological (#1430)
  • Yf collect duplicate metrics (#1424)
  • update htsjdk to 2.21.0 (#1422)
Assets 4
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