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Merge pull request #144 from tillenglert/bump_nf-test_version #719

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Merge pull request #144 from tillenglert/bump_nf-test_version

Merge pull request #144 from tillenglert/bump_nf-test_version #719

GitHub Actions / JUnit Test Report failed Oct 18, 2024 in 0s

1 tests run, 0 passed, 0 skipped, 1 failed.

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Check failure on line 1 in nf

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@github-actions github-actions / JUnit Test Report

nf.test taxa input with assembly id 

Assertion failed: 

2 of 15 assertions failed
Raw output 
Nextflow stdout:

N E X T F L O W  ~  version 24.09.2-edge
Launching `/home/runner/work/metapep/metapep/main.nf` [silly_aryabhata] DSL2 - revision: 7fa7aa2a4e
Downloading plugin [email protected]
WARN: Access to undefined parameter `monochromeLogs` -- Initialise it to a default value eg. `params.monochromeLogs = some_value`


------------------------------------------------------
                                        ,--./,-.
        ___     __   __   __   ___     /,-._.--~'
  |\ | |__  __ /  ` /  \ |__) |__         }  {
  | \| |       \__, \__/ |  \ |___     \`-._,-`-,
                                        `._,._,'
  nf-core/metapep v1.0.0
------------------------------------------------------
Core Nextflow options
  runName                   : silly_aryabhata
  containerEngine           : docker
  launchDir                 : /home/runner/work/metapep/metapep/.nf-test/tests/9c3df90acc496fe3dde6d4fd843ef497
  workDir                   : /home/runner/work/metapep/metapep/.nf-test/tests/9c3df90acc496fe3dde6d4fd843ef497/work
  projectDir                : /home/runner/work/metapep/metapep
  userName                  : runner
  profile                   : test_taxa_specific_assembly,docker
  configFiles               : 

Input/output options
  input                     : https://raw.githubusercontent.com/nf-core/test-datasets/metapep/samplesheets/v1.0/samplesheet.taxa_specific_assembly.csv
  outdir                    : /home/runner/work/metapep/metapep/.nf-test/tests/9c3df90acc496fe3dde6d4fd843ef497/output

Institutional config options
  config_profile_name       : Test profile
  config_profile_description: Minimal test dataset to check pipeline function

Max job request options
  max_cpus                  : 2
  max_memory                : 6 GB
  max_time                  : 2d

!! Only displaying parameters that differ from the pipeline defaults !!
------------------------------------------------------
If you use nf-core/metapep for your analysis please cite:

* The pipeline

* The nf-core framework
  https://doi.org/10.1038/s41587-020-0439-x

* Software dependencies
  https:/nf-core/metapep/blob/master/CITATIONS.md
------------------------------------------------------
[18/d8e2b4] Submitted process > NFCORE_METAPEP:METAPEP:PROCESS_INPUT:CHECK_SAMPLESHEET_CREATE_TABLES (samplesheet.taxa_specific_assembly.csv)
[b5/c159c1] Submitted process > NFCORE_METAPEP:METAPEP:PROCESS_INPUT:UNIFY_MODEL_LENGTHS (samplesheet.valid.csv)
[2c/2610db] Submitted process > NFCORE_METAPEP:METAPEP:ASSIGN_NUCL_ENTITY_WEIGHTS ()
[58/194b12] Submitted process > NFCORE_METAPEP:METAPEP:DOWNLOAD_PROTEINS ([0, 1])
[58/194b12] NOTE: Process `NFCORE_METAPEP:METAPEP:DOWNLOAD_PROTEINS ([0, 1])` terminated with an error exit status (1) -- Execution is retried (1)
[4f/aa5aa7] Re-submitted process > NFCORE_METAPEP:METAPEP:DOWNLOAD_PROTEINS ([0, 1])
[fd/339566] Submitted process > NFCORE_METAPEP:METAPEP:GENERATE_PROTEIN_AND_ENTITY_IDS (1)
[f0/72063b] Submitted process > NFCORE_METAPEP:METAPEP:FINALIZE_MICROBIOME_ENTITIES (1)
[c7/e75418] Submitted process > NFCORE_METAPEP:METAPEP:GENERATE_PEPTIDES (1)
[41/cca26e] Submitted process > NFCORE_METAPEP:METAPEP:SPLIT_PRED_TASKS (1)
[0a/9a13f2] Submitted process > NFCORE_METAPEP:METAPEP:PREDICT_EPITOPES (2)
[d1/71a1b6] Submitted process > NFCORE_METAPEP:METAPEP:PREDICT_EPITOPES (1)
[25/d50358] Submitted process > NFCORE_METAPEP:METAPEP:MERGE_PREDICTIONS
[93/d6f418] Submitted process > NFCORE_METAPEP:METAPEP:COLLECT_STATS (1)
[cf/47ebfe] Submitted process > NFCORE_METAPEP:METAPEP:PREPARE_SCORE_DISTRIBUTION (1)
[b5/061fb9] Submitted process > NFCORE_METAPEP:METAPEP:PREPARE_ENTITY_BINDING_RATIOS (1)
[e4/36be2a] Submitted process > NFCORE_METAPEP:METAPEP:PLOT_SCORE_DISTRIBUTION (prediction_scores.allele_0.tsv)
[61/8ec6de] Submitted process > NFCORE_METAPEP:METAPEP:PLOT_SCORE_DISTRIBUTION (prediction_scores.allele_1.tsv)
[a6/7e8471] Submitted process > NFCORE_METAPEP:METAPEP:PLOT_ENTITY_BINDING_RATIOS (entity_binding_ratios.allele_0.tsv)
[2f/b5de77] Submitted process > NFCORE_METAPEP:METAPEP:PLOT_ENTITY_BINDING_RATIOS (entity_binding_ratios.allele_1.tsv)
[ce/0c7041] Submitted process > NFCORE_METAPEP:METAPEP:MULTIQC
-[nf-core/metapep] Pipeline completed successfully-
Nextflow stderr:
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