Merge pull request #144 from tillenglert/bump_nf-test_version #719
GitHub Actions / JUnit Test Report
failed
Oct 18, 2024 in 0s
1 tests run, 0 passed, 0 skipped, 1 failed.
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github-actions / JUnit Test Report
nf.test taxa input with assembly id
Assertion failed:
2 of 15 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.09.2-edge
Launching `/home/runner/work/metapep/metapep/main.nf` [focused_shannon] DSL2 - revision: 7fa7aa2a4e
Downloading plugin [email protected]
WARN: Access to undefined parameter `monochromeLogs` -- Initialise it to a default value eg. `params.monochromeLogs = some_value`
-[2m----------------------------------------------------[0m-
[0;32m,--.[0;30m/[0;32m,-.[0m
[0;34m ___ __ __ __ ___ [0;32m/,-._.--~'[0m
[0;34m |\ | |__ __ / ` / \ |__) |__ [0;33m} {[0m
[0;34m | \| | \__, \__/ | \ |___ [0;32m\`-._,-`-,[0m
[0;32m`._,._,'[0m
[0;35m nf-core/metapep v1.0.0[0m
-[2m----------------------------------------------------[0m-
[1mCore Nextflow options[0m
[0;34mrunName : [0;32mfocused_shannon[0m
[0;34mcontainerEngine : [0;32mdocker[0m
[0;34mlaunchDir : [0;32m/home/runner/work/metapep/metapep/.nf-test/tests/9c3df90acc496fe3dde6d4fd843ef497[0m
[0;34mworkDir : [0;32m/home/runner/work/metapep/metapep/.nf-test/tests/9c3df90acc496fe3dde6d4fd843ef497/work[0m
[0;34mprojectDir : [0;32m/home/runner/work/metapep/metapep[0m
[0;34muserName : [0;32mrunner[0m
[0;34mprofile : [0;32mtest_taxa_specific_assembly,docker[0m
[0;34mconfigFiles : [0;32m[0m
[1mInput/output options[0m
[0;34minput : [0;32mhttps://raw.githubusercontent.com/nf-core/test-datasets/metapep/samplesheets/v1.0/samplesheet.taxa_specific_assembly.csv[0m
[0;34moutdir : [0;32m/home/runner/work/metapep/metapep/.nf-test/tests/9c3df90acc496fe3dde6d4fd843ef497/output[0m
[1mInstitutional config options[0m
[0;34mconfig_profile_name : [0;32mTest profile[0m
[0;34mconfig_profile_description: [0;32mMinimal test dataset to check pipeline function[0m
[1mMax job request options[0m
[0;34mmax_cpus : [0;32m2[0m
[0;34mmax_memory : [0;32m6 GB[0m
[0;34mmax_time : [0;32m2d[0m
!! Only displaying parameters that differ from the pipeline defaults !!
-[2m----------------------------------------------------[0m-
If you use nf-core/metapep for your analysis please cite:
* The pipeline
* The nf-core framework
https://doi.org/10.1038/s41587-020-0439-x
* Software dependencies
https:/nf-core/metapep/blob/master/CITATIONS.md
-[2m----------------------------------------------------[0m-
[91/2e022b] Submitted process > NFCORE_METAPEP:METAPEP:PROCESS_INPUT:CHECK_SAMPLESHEET_CREATE_TABLES (samplesheet.taxa_specific_assembly.csv)
[aa/a96611] Submitted process > NFCORE_METAPEP:METAPEP:PROCESS_INPUT:UNIFY_MODEL_LENGTHS (samplesheet.valid.csv)
[5d/6dd6e0] Submitted process > NFCORE_METAPEP:METAPEP:ASSIGN_NUCL_ENTITY_WEIGHTS ()
[88/b56c3f] Submitted process > NFCORE_METAPEP:METAPEP:DOWNLOAD_PROTEINS ([0, 1])
[9d/411f5a] Submitted process > NFCORE_METAPEP:METAPEP:GENERATE_PROTEIN_AND_ENTITY_IDS (1)
[ad/24728e] Submitted process > NFCORE_METAPEP:METAPEP:FINALIZE_MICROBIOME_ENTITIES (1)
[b8/1ed629] Submitted process > NFCORE_METAPEP:METAPEP:GENERATE_PEPTIDES (1)
[d9/ae1d06] Submitted process > NFCORE_METAPEP:METAPEP:SPLIT_PRED_TASKS (1)
[91/3501c6] Submitted process > NFCORE_METAPEP:METAPEP:PREDICT_EPITOPES (1)
[ae/18dd2f] Submitted process > NFCORE_METAPEP:METAPEP:PREDICT_EPITOPES (2)
[ca/9dcfae] Submitted process > NFCORE_METAPEP:METAPEP:MERGE_PREDICTIONS
[e2/c88cc4] Submitted process > NFCORE_METAPEP:METAPEP:COLLECT_STATS (1)
[32/f99c61] Submitted process > NFCORE_METAPEP:METAPEP:PREPARE_SCORE_DISTRIBUTION (1)
[b9/82e567] Submitted process > NFCORE_METAPEP:METAPEP:PREPARE_ENTITY_BINDING_RATIOS (1)
[cd/460ed4] Submitted process > NFCORE_METAPEP:METAPEP:PLOT_SCORE_DISTRIBUTION (prediction_scores.allele_0.tsv)
[0d/b2e84c] Submitted process > NFCORE_METAPEP:METAPEP:PLOT_SCORE_DISTRIBUTION (prediction_scores.allele_1.tsv)
[cb/040ee6] Submitted process > NFCORE_METAPEP:METAPEP:PLOT_ENTITY_BINDING_RATIOS (entity_binding_ratios.allele_1.tsv)
[3f/b26382] Submitted process > NFCORE_METAPEP:METAPEP:PLOT_ENTITY_BINDING_RATIOS (entity_binding_ratios.allele_0.tsv)
[68/df2fbd] Submitted process > NFCORE_METAPEP:METAPEP:MULTIQC
-[0;35m[nf-core/metapep][0;32m Pipeline completed successfully[0m-
Nextflow stderr:
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