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Addresses #2015 Update definitions for bladder urothelial cell types #2016

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Jun 9, 2023
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Addresses #2015 Update definitions for bladder urothelial cell types #2016

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a05131c
Addresses #2105 Update definitions for 'bladder urothelial cell'
Jun 9, 2023
78c60d6
Update cl-edit.owl
Jun 9, 2023
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Update cl-edit.owl
Jun 9, 2023
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7 changes: 2 additions & 5 deletions src/ontology/cl-edit.owl
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Expand Up @@ -26265,8 +26265,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000442 "FMA:70598")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:70598") oboInOwl:hasExactSynonym obo:CL_1000442 "epithelial cell of vesical trigone")
AnnotationAssertion(rdfs:label obo:CL_1000442 "urothelial cell of trigone of urinary bladder")
EquivalentClasses(obo:CL_1000442 ObjectIntersectionOf(obo:CL_0000731 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001257)))
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000442 obo:CL_0000731)
EquivalentClasses(obo:CL_1000442 ObjectIntersectionOf(obo:CL_0000731 ObjectSomeValuesFrom(obo:BFO_0000050 ObjectIntersectionOf(obo:UBERON_0000365 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001257)))))

# Class: obo:CL_1000443 (ciliary muscle cell)

Expand Down Expand Up @@ -27607,12 +27606,10 @@ SubClassOf(obo:CL_1001320 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000005

# Class: obo:CL_1001428 (bladder urothelial cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1038/s41385-022-00565-0") obo:IAO_0000115 obo:CL_1001428 "A urothelial cell that is part of the urothelium of the urinary bladder.")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001428 "KUPO:0001121")
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Why rdfs:comment? This is a definition, should be IAO:0000115.

Also urothellial -> urothelial.

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Thank you for spotting both.
I've noticed Protégé will sometimes default to rdfs:comment. Thank you for catching.

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And coming back to an earlier discussion: In this case, should it be “An urothelial cell” or “A urothelial cell”? (Genuine question; I’d be inclined to say “an”, but I’ll happily yield to native English speakers on that point.)

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In this instance it should be "A" since "urothelial" starts with a consonant sound, like "urine" or "university".

AnnotationAssertion(rdfs:label obo:CL_1001428 "bladder urothelial cell")
EquivalentClasses(obo:CL_1001428 ObjectIntersectionOf(obo:CL_0000731 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004645)))
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001428 obo:CL_0000731)
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001428 obo:CL_1001319)
SubClassOf(obo:CL_1001428 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004645))

# Class: obo:CL_1001430 (urethra urothelial cell)

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