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Addresses #2103 Additional edits to 'pain receptor cell' #2105

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Aug 17, 2023
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Addresses #2103 Additional edits to 'pain receptor cell' #2105

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7 changes: 2 additions & 5 deletions src/ontology/cl-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -5333,13 +5333,10 @@ SubClassOf(obo:CL_0000197 obo:CL_0000003)
# Class: obo:CL_0000198 (pain receptor cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D009619") obo:IAO_0000115 obo:CL_0000198 "The peripheral receptor for pain. Includes receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli. All mammalian nociceptors are free nerve endings.")
AnnotationAssertion(Annotation(rdfs:seeAlso "https://meshb.nlm.nih.gov/record/ui?ui=D009619") oboInOwl:hasExactSynonym obo:CL_0000198 "nociceptor")
AnnotationAssertion(Annotation(rdfs:seeAlso "https://www.thefreedictionary.com/nocireceptor") oboInOwl:hasExactSynonym obo:CL_0000198 "nocireceptor")
AnnotationAssertion(Annotation(rdfs:seeAlso "https://meshb.nlm.nih.gov/record/ui?ui=D009619"^^xsd:anyURI) oboInOwl:hasExactSynonym obo:CL_0000198 "nociceptor")
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should these be dbxref then? brief look at previous PR https:/obophenotype/cell-ontology/pull/1558/files seems to suggest so

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Thanks for the prompt review. Logic detailed below.

Context: Current editor guidelines, under section titled "Technical details of adding a cross-reference using Protégé"

MESH:D009619 directs to https://id.nlm.nih.gov/mesh/D009619.html.
"MESH:D009619" would be added using database_cross_reference.

In this case, the link "https://meshb.nlm.nih.gov/record/ui?ui=D009619" is used since the page at that location more clearly justifies the synonym.

Screenshot 2023-08-17 at 10 10 45

Per current editor guidelines, URLs should be used sparingly, but when used are added using 'see also' with datatype xsd:anyURI.

AnnotationAssertion(Annotation(rdfs:seeAlso "https://www.thefreedictionary.com/nocireceptor"^^xsd:anyURI) oboInOwl:hasExactSynonym obo:CL_0000198 "nocireceptor")
AnnotationAssertion(rdfs:comment obo:CL_0000198 "Editor note: request detection of stimulus involved in sensory perception of pain; add develops_from relationship")
AnnotationAssertion(rdfs:label obo:CL_0000198 "pain receptor cell")
AnnotationAssertion(rdfs:seeAlso obo:CL_0000198 "MESH:A08.675.650.915.875")
AnnotationAssertion(rdfs:seeAlso obo:CL_0000198 "MESH:A08.800.950.875")
AnnotationAssertion(rdfs:seeAlso obo:CL_0000198 "MESH:A11.671.650.915.875")
SubClassOf(obo:CL_0000198 obo:CL_0000006)

# Class: obo:CL_0000199 (mechanoreceptor cell)
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