Upgrade phylotree.js and fix node renaming #312
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This PR upgrades all the NPM packages, which results in phylotree.js being upgraded to phylotree.js v1.4.1, which includes two changes we requested. This PR will also fix the issues related to that change in Klados. We also remove the escaping code I added previously since phylotree.js fixed this in PR veg/phylotree.js#448.
Closes #197. Closes #200.