Early life adversity shapes social subordination and cell-type-specific transcriptomic (Kos et al., 2023)
scRNA-seq analyses
├── code
│ ├── diffxpy_standard.py
│ └── diffxpy_standard.sh
├── notebooks
│ ├── 01-annotation
│ │ └── LouvainAnnotation.ipynb
│ ├── 02-DE
│ │ ├── DEResults.ipynb
│ │ ├── Pattern.ipynb
│ │ └── pattern_scores.xlsx
│ └── 03-Paper
│ ├── Figures.ipynb
│ └── QC_figures.ipynb
├── preprocessing
│ ├── 01_preprocessing.ipynb
│ ├── 02_cluster_annotation.ipynb
│ ├── 03_01_differential_expression_norep.ipynb
│ ├── 03_differential_expression.ipynb
│ └── 04_GSEA.ipynb
└── revision
└── Revision.ipynb
The processed data can be downloaded from Figshare.
