README.md

Early life adversity shapes social subordination and cell-type-specific transcriptomic (Kos et al., 2023)

scRNA-seq analyses

Structure

├── code
│   ├── diffxpy_standard.py
│   └── diffxpy_standard.sh
├── notebooks
│   ├── 01-annotation
│   │   └── LouvainAnnotation.ipynb
│   ├── 02-DE
│   │   ├── DEResults.ipynb
│   │   ├── Pattern.ipynb
│   │   └── pattern_scores.xlsx
│   └── 03-Paper
│       ├── Figures.ipynb
│       └── QC_figures.ipynb
├── preprocessing
│   ├── 01_preprocessing.ipynb
│   ├── 02_cluster_annotation.ipynb
│   ├── 03_01_differential_expression_norep.ipynb
│   ├── 03_differential_expression.ipynb
│   └── 04_GSEA.ipynb
└── revision
    └── Revision.ipynb

Data

The processed data can be downloaded from Figshare.

License

• MIT license